Wall clock time and date at job start Mon Mar 30 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86801 * 120.00278 * 2 1 4 4 H 1.48500 * 109.46965 * 239.99834 * 3 2 1 5 5 H 1.48503 * 109.46732 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47248 * 119.99569 * 3 2 1 7 7 C 1.40460 * 119.99547 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99476 * 180.02562 * 7 2 1 9 9 C 1.41024 * 120.00692 * 0.02562 * 7 2 1 10 10 O 1.21439 * 119.99672 * 0.02562 * 9 7 2 11 11 C 1.50694 * 120.00453 * 179.97438 * 9 7 2 12 12 C 1.53006 * 119.29559 * 109.76913 * 11 9 7 13 13 C 1.53001 * 60.37447 * 112.24213 * 12 11 9 14 14 H 1.08998 * 119.30101 * 248.68946 * 13 12 11 15 15 C 1.54269 * 118.19506 * 93.61780 * 13 12 11 16 16 C 1.54887 * 104.19647 * 272.20715 * 15 13 12 17 17 C 1.54265 * 117.41634 * 315.43183 * 11 9 7 18 18 H 0.96995 * 119.99816 * 0.02562 * 1 2 3 19 19 H 1.08995 * 117.45979 * 219.84252 * 12 11 9 20 20 H 1.08997 * 117.45805 * 4.64675 * 12 11 9 21 21 H 1.09006 * 110.48400 * 153.53213 * 15 13 12 22 22 H 1.08994 * 110.60242 * 30.94462 * 15 13 12 23 23 H 1.09006 * 110.75706 * 279.63015 * 16 15 13 24 24 H 1.08999 * 110.91540 * 156.33150 * 16 15 13 25 25 H 1.09005 * 110.48061 * 1.09773 * 17 11 9 26 26 H 1.09003 * 110.48759 * 123.73544 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.0931 1.6963 -1.2125 5 1 1.2743 2.7464 -0.0006 6 1 3.0930 1.6964 1.2125 7 6 2.0074 -1.2165 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3024 -2.4378 0.0005 10 8 0.0880 -2.4378 -0.0004 11 6 2.0558 -3.7429 0.0005 12 6 2.0392 -4.6169 1.2563 13 6 1.3358 -5.1027 -0.0126 14 1 0.2479 -5.1679 -0.0278 15 6 2.1234 -6.0090 -0.9812 16 6 2.8535 -5.0172 -1.9206 17 6 3.2558 -3.8703 -0.9604 18 1 -0.4849 0.8400 -0.0004 19 1 2.9690 -5.1119 1.5364 20 1 1.4114 -4.2926 2.0862 21 1 1.4425 -6.6422 -1.5501 22 1 2.8439 -6.6185 -0.4359 23 1 2.1801 -4.6530 -2.6965 24 1 3.7366 -5.4784 -2.3628 25 1 3.4013 -2.9426 -1.5140 26 1 4.1592 -4.1328 -0.4099 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575533778.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:20 Heat of formation + Delta-G solvation = -49.891760 kcal Electronic energy + Delta-G solvation = -10722.823628 eV Core-core repulsion = 8765.752677 eV Total energy + Delta-G solvation = -1957.070951 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.70436 -37.87614 -34.75444 -32.32960 -30.16582 -28.17641 -24.20516 -22.87957 -21.24185 -19.84142 -18.11565 -17.50350 -16.24308 -15.80418 -15.02480 -14.47848 -14.11155 -13.93243 -13.77934 -13.27203 -12.88246 -12.69719 -12.13738 -12.09436 -11.83813 -11.78566 -11.67745 -11.07856 -10.94300 -10.26346 -9.49733 -8.29863 -7.09355 1.35399 1.35742 1.51418 2.11286 2.20368 2.82339 3.45845 3.69400 3.92609 4.10554 4.29164 4.44061 4.64059 4.68745 4.76901 4.84713 4.97373 5.03413 5.16811 5.21755 5.35208 5.36214 5.45645 5.58641 5.99608 6.71738 6.85107 8.29243 8.52495 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.064520 B = 0.013042 C = 0.012044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.871327 B = 2146.398192 C = 2324.231681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.022 3.978 3 Si 0.995 3.005 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.551 4.551 8 H 0.086 0.914 9 C 0.373 3.627 10 O -0.605 6.605 11 C -0.195 4.195 12 C -0.124 4.124 13 C -0.163 4.163 14 H 0.075 0.925 15 C -0.079 4.079 16 C -0.118 4.118 17 C -0.076 4.076 18 H 0.280 0.720 19 H 0.122 0.878 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.685 -5.453 -1.382 10.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.196 4.196 3 Si 0.813 3.187 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.582 4.582 8 H 0.104 0.896 9 C 0.272 3.728 10 O -0.499 6.499 11 C -0.196 4.196 12 C -0.161 4.161 13 C -0.181 4.181 14 H 0.094 0.906 15 C -0.116 4.116 16 C -0.155 4.155 17 C -0.113 4.113 18 H 0.091 0.909 19 H 0.140 0.860 20 H 0.088 0.912 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.066 0.934 24 H 0.118 0.882 25 H 0.074 0.926 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.942 -5.425 -1.400 9.720 hybrid contribution -0.315 0.926 0.164 0.992 sum 7.627 -4.499 -1.236 8.941 Atomic orbital electron populations 1.70111 1.10015 1.29742 1.32477 1.27343 0.95481 1.05716 0.91077 0.85114 0.78515 0.74374 0.80672 1.17452 1.19394 1.17547 1.21200 0.95833 0.92457 1.48718 0.89587 1.19460 0.87818 0.88955 0.76555 1.90338 1.17892 1.89851 1.51800 1.23229 1.01278 0.93001 1.02064 1.22907 1.02204 1.00738 0.90207 1.23248 0.97734 0.96867 1.00278 0.90625 1.21912 0.98227 0.96129 0.95367 1.22683 1.00401 0.95254 0.97191 1.21827 0.95073 0.98842 0.95555 0.90923 0.85998 0.91160 0.90574 0.89023 0.93420 0.88209 0.92571 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.70 11.72 21.91 0.26 -48.45 15 2 C 0.02 1.24 5.50 85.43 0.47 1.71 15 3 Si 1.00 40.50 29.56 68.60 2.03 42.53 15 4 H -0.25 -9.57 7.11 99.48 0.71 -8.86 15 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 6 H -0.25 -9.64 7.11 99.48 0.71 -8.93 15 7 C -0.55 -31.91 8.56 23.50 0.20 -31.71 15 8 H 0.09 4.51 7.58 -2.91 -0.02 4.49 15 9 C 0.37 22.45 6.59 26.37 0.17 22.62 15 10 O -0.60 -42.02 15.35 -3.52 -0.05 -42.07 15 11 C -0.19 -9.03 2.60 -52.21 -0.14 -9.17 15 12 C -0.12 -4.89 9.86 30.60 0.30 -4.58 15 13 C -0.16 -6.62 6.60 -10.07 -0.07 -6.68 15 14 H 0.08 3.48 8.14 -2.39 -0.02 3.46 15 15 C -0.08 -2.36 6.62 31.67 0.21 -2.15 15 16 C -0.12 -3.61 6.91 31.88 0.22 -3.39 15 17 C -0.08 -2.80 6.17 31.67 0.20 -2.61 15 18 H 0.28 15.39 8.29 -92.71 -0.77 14.62 15 19 H 0.12 3.78 8.14 -2.39 -0.02 3.76 15 20 H 0.07 3.01 8.14 -2.39 -0.02 2.99 15 21 H 0.08 2.04 8.14 -2.38 -0.02 2.02 15 22 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.05 1.61 8.14 -2.38 -0.02 1.59 15 24 H 0.10 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.06 2.27 7.39 -2.38 -0.02 2.25 15 26 H 0.08 2.61 8.14 -2.39 -0.02 2.59 15 Total: -1.00 -74.21 225.78 4.96 -69.26 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.16 Total: 14.69 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 1.57 Total: -35.96 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.26 Total: -48.45 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.05 Total: -42.07 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -74.21 4.96 -69.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575533778.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.364 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds