Wall clock time and date at job start Mon Mar 30 2020 01:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 11 11 O 1.20758 * 120.00087 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99940 * 179.97438 * 10 9 7 13 13 H 1.09005 * 115.55036 * 355.67717 * 12 10 9 14 14 C 1.53006 * 117.49831 * 141.38213 * 12 10 9 15 15 C 1.52995 * 59.99893 * 107.49158 * 14 12 10 16 16 C 1.52990 * 138.58634 * 130.89115 * 15 14 12 17 17 C 1.52994 * 138.58826 * 229.11052 * 15 14 12 18 18 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 20 20 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 21 21 H 1.09000 * 117.49968 * 214.98663 * 14 12 10 22 22 H 1.08998 * 117.49578 * 0.02562 * 14 12 10 23 23 H 1.08996 * 117.50059 * 238.38286 * 16 15 14 24 24 H 1.09000 * 117.50054 * 23.40655 * 16 15 14 25 25 H 1.09000 * 117.49682 * 336.59229 * 17 15 14 26 26 H 1.08994 * 117.49767 * 121.59344 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 8 3.4177 -3.4239 -0.0001 12 6 1.7281 -5.0654 0.0000 13 1 0.6469 -5.1818 0.0746 14 6 2.4921 -6.0852 -0.8470 15 6 2.6009 -6.1230 0.6786 16 6 2.4925 -7.1454 1.8116 17 6 3.6909 -6.1961 1.7498 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5568 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 1.9135 -6.8725 -1.3301 22 1 3.3583 -5.7284 -1.4042 23 1 1.7455 -6.9632 2.5842 24 1 2.6664 -8.1923 1.5632 25 1 4.6532 -6.6186 1.4606 26 1 3.7324 -5.3892 2.4813 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575537954.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:03 Heat of formation + Delta-G solvation = 11.338086 kcal Electronic energy + Delta-G solvation = -10224.953918 eV Core-core repulsion = 8270.538092 eV Total energy + Delta-G solvation = -1954.415825 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.08417 -36.78522 -32.91970 -32.26616 -29.11427 -24.78717 -22.28316 -22.09528 -19.57038 -17.99499 -16.29113 -15.36843 -14.89317 -14.76872 -14.38897 -13.68191 -13.15860 -12.37344 -11.78004 -11.47678 -11.35796 -11.12388 -10.83108 -10.58896 -10.06962 -9.96278 -9.81397 -9.71347 -9.28113 -8.42031 -8.28162 -6.04174 -4.05039 2.84314 3.36825 3.39199 3.44433 3.84536 4.10038 4.45216 4.55863 4.91736 5.08150 5.33387 5.47375 5.66988 5.71770 5.80846 5.86975 5.93310 6.04732 6.26364 6.30656 6.76921 7.27411 7.39019 7.94559 8.24778 8.75711 9.04054 9.59794 11.07823 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.076914 B = 0.009323 C = 0.009005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.953761 B = 3002.762825 C = 3108.595998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.021 4.021 10 C 0.381 3.619 11 O -0.462 6.462 12 C -0.164 4.164 13 H 0.120 0.880 14 C -0.105 4.105 15 C -0.208 4.208 16 C -0.133 4.133 17 C -0.122 4.122 18 H 0.262 0.738 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.099 0.901 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 -11.306 1.218 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.058 4.058 10 C 0.257 3.743 11 O -0.336 6.336 12 C -0.183 4.183 13 H 0.138 0.862 14 C -0.142 4.142 15 C -0.208 4.208 16 C -0.170 4.170 17 C -0.159 4.159 18 H 0.072 0.928 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.117 0.883 22 H 0.118 0.882 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.711 -11.062 1.219 11.454 hybrid contribution 0.119 0.891 -0.008 0.899 sum 2.830 -10.170 1.211 10.626 Atomic orbital electron populations 1.69952 1.06044 1.26980 1.50952 1.25005 0.94885 0.99430 0.95132 0.86524 0.79444 0.82460 0.78833 1.20124 1.21307 1.20148 1.21163 0.94085 0.89702 1.50572 0.91081 1.19560 0.95032 0.91638 0.99566 1.24534 0.90687 0.89629 0.69460 1.90217 1.19949 1.87089 1.36371 1.23044 0.98907 0.92283 1.04105 0.86212 1.22594 1.01728 0.99611 0.90256 1.21170 1.04682 1.02437 0.92558 1.22703 1.00922 0.95042 0.98306 1.22572 0.92954 1.01181 0.99211 0.92843 0.92879 0.93000 0.88309 0.88206 0.88658 0.88764 0.88745 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 7 C -0.52 -15.18 8.92 -34.44 -0.31 -15.49 15 8 H 0.07 2.15 6.76 -52.49 -0.35 1.79 15 9 C -0.02 -0.55 5.40 -29.03 -0.16 -0.71 15 10 C 0.38 8.69 6.91 -29.04 -0.20 8.49 15 11 O -0.46 -11.73 15.69 6.00 0.09 -11.63 15 12 C -0.16 -2.93 6.13 -91.77 -0.56 -3.49 15 13 H 0.12 1.92 8.14 -51.93 -0.42 1.50 15 14 C -0.11 -1.60 10.09 -26.73 -0.27 -1.87 15 15 C -0.21 -3.30 5.14 -154.52 -0.79 -4.10 15 16 C -0.13 -1.67 10.53 -26.73 -0.28 -1.96 15 17 C -0.12 -1.79 10.53 -26.73 -0.28 -2.07 15 18 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 19 H 0.05 1.39 8.14 -51.93 -0.42 0.97 15 20 H 0.05 1.37 8.14 -51.93 -0.42 0.95 15 21 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.10 1.60 8.12 -51.93 -0.42 1.18 15 23 H 0.10 1.13 8.14 -51.93 -0.42 0.70 15 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.10 1.49 8.14 -51.93 -0.42 1.07 15 LS Contribution 237.27 15.07 3.58 3.58 Total: -1.00 -31.51 237.27 -6.86 -38.37 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -3.29 Total: -1.90 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.95 Total: -19.65 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.51 -6.86 -38.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575537954.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.706 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds