Wall clock time and date at job start Mon Mar 30 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47198 * 110.88803 * 2 1 4 4 N 2.60800 * 110.88745 * 0.02562 * 2 1 3 5 5 C 1.55405 * 111.06990 * 123.78704 * 2 1 3 6 6 C 1.54325 * 102.82616 * 153.48436 * 5 2 1 7 7 N 1.47018 * 107.40412 * 337.97548 * 6 5 2 8 8 C 1.36936 * 125.64899 * 178.89496 * 7 6 5 9 9 H 1.08004 * 120.00261 * 179.97438 * 8 7 6 10 10 C 1.38814 * 120.00145 * 359.97438 * 8 7 6 11 11 N 1.31617 * 119.99550 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00112 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47291 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.46906 * 120.00302 * 12 10 8 15 15 H 1.48501 * 109.47001 * 239.99832 * 12 10 8 16 16 C 1.47426 * 108.70517 * 358.86539 * 7 6 5 17 17 H 1.08997 * 109.47394 * 182.42018 * 1 2 3 18 18 H 1.08994 * 109.47153 * 302.42515 * 1 2 3 19 19 H 1.09004 * 109.47185 * 62.42496 * 1 2 3 20 20 H 1.09000 * 110.69068 * 35.19694 * 5 2 1 21 21 H 1.09002 * 110.85092 * 271.84688 * 5 2 1 22 22 H 1.09002 * 109.88192 * 218.47989 * 6 5 2 23 23 H 1.09000 * 109.88128 * 97.46841 * 6 5 2 24 24 H 0.97004 * 119.99606 * 179.97438 * 11 10 8 25 25 H 1.08999 * 110.36956 * 142.96999 * 16 7 6 26 26 H 1.09001 * 110.36709 * 265.18192 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.3752 0.0000 4 7 2.4598 2.4366 0.0011 5 6 2.0887 -0.8064 1.2052 6 6 3.4683 -1.2734 0.6950 7 7 3.4274 -1.2420 -0.7742 8 6 4.4642 -1.5649 -1.6085 9 1 4.3331 -1.5100 -2.6792 10 6 5.6837 -1.9629 -1.0782 11 7 5.8434 -2.0303 0.2265 12 14 7.0978 -2.4040 -2.2163 13 1 6.6643 -2.2478 -3.6279 14 1 8.2475 -1.5029 -1.9494 15 1 7.5059 -3.8115 -1.9762 16 6 2.0852 -0.8061 -1.2007 17 1 -0.3634 -1.0267 0.0434 18 1 -0.3633 0.5510 0.8674 19 1 -0.3634 0.4757 -0.9110 20 1 1.4496 -1.6614 1.4260 21 1 2.1975 -0.1682 2.0821 22 1 3.6665 -2.2886 1.0388 23 1 4.2451 -0.6007 1.0587 24 1 6.6955 -2.3088 0.5970 25 1 2.1553 -0.1714 -2.0840 26 1 1.4527 -1.6702 -1.4046 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595834169.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:05 Heat of formation + Delta-G solvation = 25.481347 kcal Electronic energy + Delta-G solvation = -10726.511125 eV Core-core repulsion = 8805.001348 eV Total energy + Delta-G solvation = -1921.509776 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.02085 -37.01776 -34.94103 -32.31582 -30.43154 -27.51237 -25.58613 -23.16349 -22.06259 -19.05080 -17.72493 -16.74341 -15.83527 -15.55029 -15.08878 -14.77058 -14.05845 -13.75533 -13.56683 -13.33402 -13.22385 -12.81873 -12.70546 -12.60399 -11.99290 -11.86536 -11.82102 -11.48995 -11.42068 -10.70435 -8.89037 -7.85195 -5.20094 1.45309 1.46580 1.56405 1.74855 1.83498 2.49305 3.00313 3.35195 3.64027 3.80298 4.02506 4.17742 4.68932 4.75086 4.86375 4.98028 5.10911 5.12838 5.16091 5.43501 5.47432 5.67560 5.78401 6.20815 6.61995 7.10854 7.77987 8.40097 9.25234 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.061916 B = 0.012651 C = 0.012399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.120457 B = 2212.784080 C = 2257.646759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.017 3.983 3 C 0.252 3.748 4 N -0.500 5.500 5 C -0.113 4.113 6 C 0.177 3.823 7 N -0.630 5.630 8 C -0.238 4.238 9 H 0.085 0.915 10 C -0.069 4.069 11 N -0.951 5.951 12 Si 0.975 3.025 13 H -0.264 1.264 14 H -0.299 1.299 15 H -0.288 1.288 16 C 0.144 3.856 17 H 0.103 0.897 18 H 0.077 0.923 19 H 0.072 0.928 20 H 0.117 0.883 21 H 0.078 0.922 22 H 0.020 0.980 23 H -0.003 1.003 24 H 0.245 0.755 25 H 0.040 0.960 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.676 -0.386 0.081 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.012 3.988 3 C -0.064 4.064 4 N -0.176 5.176 5 C -0.152 4.152 6 C 0.052 3.948 7 N -0.356 5.356 8 C -0.367 4.367 9 H 0.102 0.898 10 C -0.262 4.262 11 N -0.600 5.600 12 Si 0.804 3.196 13 H -0.188 1.188 14 H -0.227 1.227 15 H -0.215 1.215 16 C 0.018 3.982 17 H 0.121 0.879 18 H 0.096 0.904 19 H 0.091 0.909 20 H 0.135 0.865 21 H 0.096 0.904 22 H 0.038 0.962 23 H 0.015 0.985 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.865 1.168 0.073 10.928 hybrid contribution 1.409 -0.478 -0.375 1.534 sum -9.456 0.690 -0.302 9.486 Atomic orbital electron populations 1.21730 0.86871 1.05456 1.03765 1.19710 0.98402 0.81516 0.99151 1.29442 0.91286 0.94493 0.91212 1.81087 1.10717 1.15134 1.10625 1.23009 0.96618 0.99983 0.95560 1.20996 0.93056 0.97630 0.83138 1.44804 1.09245 1.79085 1.02513 1.19495 0.90421 1.37010 0.89811 0.89756 1.25641 1.00431 1.02655 0.97452 1.70188 1.24157 1.54832 1.10841 0.85052 0.79000 0.76981 0.78596 1.18844 1.22655 1.21506 1.21915 0.86282 0.96118 0.93904 0.87856 0.90441 0.90867 0.86480 0.90366 0.96174 0.98472 0.94533 0.94163 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.62 71.98 0.62 -1.56 15 2 C 0.02 0.50 0.90 -52.51 -0.05 0.46 15 3 C 0.25 9.39 13.82 89.44 1.24 10.62 15 4 N -0.50 -21.11 18.54 20.01 0.37 -20.74 15 5 C -0.11 -3.58 5.92 31.87 0.19 -3.40 15 6 C 0.18 8.41 5.20 86.73 0.45 8.86 15 7 N -0.63 -31.23 3.37 -691.97 -2.33 -33.56 15 8 C -0.24 -13.25 10.28 84.03 0.86 -12.38 15 9 H 0.08 4.47 7.83 -2.91 -0.02 4.45 15 10 C -0.07 -3.96 5.49 84.86 0.47 -3.49 15 11 N -0.95 -57.71 10.31 21.65 0.22 -57.48 15 12 Si 0.97 46.31 29.55 68.60 2.03 48.34 15 13 H -0.26 -11.73 7.11 99.48 0.71 -11.02 15 14 H -0.30 -14.48 7.11 99.48 0.71 -13.77 15 15 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 16 C 0.14 5.23 6.14 86.86 0.53 5.76 15 17 H 0.10 1.40 8.12 -2.39 -0.02 1.38 15 18 H 0.08 1.21 8.14 -2.39 -0.02 1.19 15 19 H 0.07 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.12 2.89 8.02 -2.39 -0.02 2.87 15 21 H 0.08 2.33 8.03 -2.39 -0.02 2.31 15 22 H 0.02 1.05 7.51 -2.39 -0.02 1.04 15 23 H 0.00 -0.17 7.37 -2.39 -0.02 -0.19 15 24 H 0.25 14.52 8.31 -92.71 -0.77 13.75 15 25 H 0.04 1.49 8.04 -2.39 -0.02 1.47 15 26 H 0.07 2.27 8.04 -2.39 -0.02 2.25 15 Total: -1.00 -70.21 226.99 5.76 -64.45 By element: Atomic # 1 Polarization: -7.03 SS G_CDS: 1.16 Total: -5.87 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 4.31 Total: 4.87 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -1.74 Total: -111.79 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -70.21 5.76 -64.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595834169.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.927 kcal (2) G-P(sol) polarization free energy of solvation -70.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds