Wall clock time and date at job start Mon Mar 30 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.39877 * 107.91756 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.89624 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46586 * 125.02198 * 5 4 3 7 7 H 1.07993 * 120.00664 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99473 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99926 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00422 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47254 * 89.99410 * 10 8 6 12 12 H 1.48497 * 109.47443 * 209.99966 * 10 8 6 13 13 H 1.48503 * 109.46826 * 329.99937 * 10 8 6 14 14 N 1.30833 * 108.20100 * 359.97438 * 4 3 2 15 15 N 1.34945 * 126.12786 * 179.97438 * 2 1 3 16 16 C 1.46500 * 126.03821 * 0.02628 * 15 2 1 17 17 H 1.08994 * 109.47654 * 270.00184 * 1 2 3 18 18 H 1.09000 * 109.47275 * 30.01021 * 1 2 3 19 19 H 1.08999 * 109.46874 * 150.00523 * 1 2 3 20 20 H 1.07996 * 126.03879 * 359.97438 * 3 2 1 21 21 H 1.08997 * 109.47069 * 245.02383 * 5 4 3 22 22 H 1.08997 * 109.46784 * 5.02456 * 5 4 3 23 23 H 0.97003 * 119.99992 * 180.02562 * 9 8 6 24 24 H 1.09000 * 109.47005 * 269.99454 * 16 15 2 25 25 H 1.09003 * 109.46946 * 29.99763 * 16 15 2 26 26 H 1.09006 * 109.46968 * 149.99628 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5396 0.0003 6 6 5.7389 1.1743 1.1643 7 1 5.4467 0.3814 1.8368 8 6 6.9220 1.8517 1.3701 9 7 7.6939 1.5334 2.3862 10 14 7.4280 3.2228 0.2066 11 1 6.8900 4.5155 0.7012 12 1 8.9098 3.2955 0.1419 13 1 6.8862 2.9472 -1.1483 14 7 3.6333 -0.6524 0.0015 15 7 2.3026 -1.0900 0.0005 16 6 1.8539 -2.4846 0.0006 17 1 -0.3634 0.0000 1.0276 18 1 -0.3634 0.8899 -0.5140 19 1 -0.3633 -0.8900 -0.5138 20 1 1.9739 2.1211 -0.0004 21 1 5.4032 1.4005 -0.9311 22 1 4.5483 2.5819 0.0895 23 1 8.5261 2.0102 2.5313 24 1 1.7424 -2.8303 1.0283 25 1 0.8956 -2.5579 -0.5136 26 1 2.5901 -3.1031 -0.5130 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606246078.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:09 Heat of formation + Delta-G solvation = 67.771646 kcal Electronic energy + Delta-G solvation = -10325.636190 eV Core-core repulsion = 8405.960258 eV Total energy + Delta-G solvation = -1919.675932 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.52361 -33.95810 -32.29333 -31.53422 -29.36740 -26.51615 -25.59903 -22.52051 -19.70123 -18.41168 -16.65578 -15.94723 -15.12567 -14.19810 -13.71811 -13.24865 -13.03076 -12.71238 -12.41125 -12.14738 -12.04809 -11.69851 -11.45217 -10.59162 -10.33533 -9.98284 -9.55537 -9.24698 -8.49068 -8.21821 -7.80908 -5.95945 -3.93336 2.48557 3.12490 3.36669 3.43705 3.47181 3.66722 4.51084 4.93059 5.00957 5.22960 5.36611 5.37496 5.57805 5.62123 5.81983 5.89613 6.28777 6.42195 6.71064 7.03231 7.27511 7.50166 7.64849 7.79042 8.56897 8.68318 9.12199 9.63802 11.17656 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.070664 B = 0.010446 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.143652 B = 2679.891747 C = 2891.103529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.060 3.940 3 C -0.275 4.275 4 C 0.121 3.879 5 C 0.055 3.945 6 C -0.505 4.505 7 H 0.075 0.925 8 C 0.066 3.934 9 N -0.903 5.903 10 Si 0.878 3.122 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.264 1.264 14 N -0.288 5.288 15 N -0.392 5.392 16 C 0.108 3.892 17 H 0.073 0.927 18 H 0.079 0.921 19 H 0.063 0.937 20 H 0.139 0.861 21 H 0.036 0.964 22 H 0.033 0.967 23 H 0.263 0.737 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 -3.000 -5.940 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.305 4.305 4 C -0.046 4.046 5 C 0.016 3.984 6 C -0.544 4.544 7 H 0.093 0.907 8 C -0.134 4.134 9 N -0.542 5.542 10 Si 0.705 3.295 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.189 1.189 14 N -0.109 5.109 15 N -0.175 5.175 16 C -0.035 4.035 17 H 0.092 0.908 18 H 0.098 0.902 19 H 0.081 0.919 20 H 0.157 0.843 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.860 -4.181 -5.855 14.736 hybrid contribution -0.156 1.351 -0.389 1.415 sum -13.017 -2.830 -6.244 14.712 Atomic orbital electron populations 1.20338 0.88280 1.02947 1.02663 1.20920 0.93986 0.87980 1.03756 1.21210 0.92458 0.98419 1.18391 1.22755 0.95807 0.91384 0.94654 1.18261 0.88962 0.92527 0.98635 1.20966 1.03653 1.19617 1.10164 0.90704 1.24984 0.96149 0.97060 0.95241 1.69908 1.13005 1.41930 1.29389 0.86808 0.77745 0.82748 0.82242 1.20131 1.21297 1.18882 1.77533 0.93878 1.13407 1.26089 1.48527 1.04725 1.05170 1.59058 1.21625 1.00149 0.79100 1.02582 0.90810 0.90188 0.91857 0.84295 0.94641 0.94875 0.92745 0.91532 0.90501 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.12 36.00 0.36 -0.57 15 2 C 0.06 1.03 6.93 -82.27 -0.57 0.46 15 3 C -0.28 -5.50 10.64 -40.01 -0.43 -5.93 15 4 C 0.12 2.91 6.43 -82.40 -0.53 2.38 15 5 C 0.06 1.43 4.62 -29.03 -0.13 1.29 15 6 C -0.51 -15.31 9.62 -34.44 -0.33 -15.64 15 7 H 0.07 2.51 7.98 -52.49 -0.42 2.10 15 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 9 N -0.90 -28.73 13.96 55.43 0.77 -27.95 15 10 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 15 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 13 H -0.26 -6.33 6.54 56.52 0.37 -5.96 15 14 N -0.29 -6.91 12.54 33.67 0.42 -6.49 15 15 N -0.39 -7.34 4.01 -63.88 -0.26 -7.59 15 16 C 0.11 1.38 11.27 59.85 0.67 2.05 15 17 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 18 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 19 H 0.06 0.57 7.08 -51.93 -0.37 0.20 15 20 H 0.14 2.43 8.06 -52.49 -0.42 2.00 15 21 H 0.04 0.92 7.20 -51.93 -0.37 0.54 15 22 H 0.03 0.80 7.55 -51.93 -0.39 0.41 15 23 H 0.26 7.77 8.31 -40.82 -0.34 7.43 15 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 25 H 0.08 0.71 7.05 -51.93 -0.37 0.34 15 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 229.62 15.07 3.46 3.46 Total: -1.00 -35.08 229.62 -4.52 -39.60 By element: Atomic # 1 Polarization: -1.09 SS G_CDS: -3.20 Total: -4.29 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.05 Total: -14.05 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.94 Total: -42.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -35.08 -4.52 -39.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606246078.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.373 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds