Wall clock time and date at job start Mon Mar 30 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.39877 * 107.91756 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.89624 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46586 * 125.02198 * 5 4 3 7 7 H 1.07993 * 120.00664 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99473 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99926 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00422 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47254 * 89.99410 * 10 8 6 12 12 H 1.48497 * 109.47443 * 209.99966 * 10 8 6 13 13 H 1.48503 * 109.46826 * 329.99937 * 10 8 6 14 14 N 1.30833 * 108.20100 * 359.97438 * 4 3 2 15 15 N 1.34945 * 126.12786 * 179.97438 * 2 1 3 16 16 C 1.46500 * 126.03821 * 0.02628 * 15 2 1 17 17 H 1.08994 * 109.47654 * 270.00184 * 1 2 3 18 18 H 1.09000 * 109.47275 * 30.01021 * 1 2 3 19 19 H 1.08999 * 109.46874 * 150.00523 * 1 2 3 20 20 H 1.07996 * 126.03879 * 359.97438 * 3 2 1 21 21 H 1.08997 * 109.47069 * 245.02383 * 5 4 3 22 22 H 1.08997 * 109.46784 * 5.02456 * 5 4 3 23 23 H 0.97003 * 119.99992 * 180.02562 * 9 8 6 24 24 H 1.09000 * 109.47005 * 269.99454 * 16 15 2 25 25 H 1.09003 * 109.46946 * 29.99763 * 16 15 2 26 26 H 1.09006 * 109.46968 * 149.99628 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5396 0.0003 6 6 5.7389 1.1743 1.1643 7 1 5.4467 0.3814 1.8368 8 6 6.9220 1.8517 1.3701 9 7 7.6939 1.5334 2.3862 10 14 7.4280 3.2228 0.2066 11 1 6.8900 4.5155 0.7012 12 1 8.9098 3.2955 0.1419 13 1 6.8862 2.9472 -1.1483 14 7 3.6333 -0.6524 0.0015 15 7 2.3026 -1.0900 0.0005 16 6 1.8539 -2.4846 0.0006 17 1 -0.3634 0.0000 1.0276 18 1 -0.3634 0.8899 -0.5140 19 1 -0.3633 -0.8900 -0.5138 20 1 1.9739 2.1211 -0.0004 21 1 5.4032 1.4005 -0.9311 22 1 4.5483 2.5819 0.0895 23 1 8.5261 2.0102 2.5313 24 1 1.7424 -2.8303 1.0283 25 1 0.8956 -2.5579 -0.5136 26 1 2.5901 -3.1031 -0.5130 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606246078.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:09 Heat of formation + Delta-G solvation = 42.246202 kcal Electronic energy + Delta-G solvation = -10326.743056 eV Core-core repulsion = 8405.960258 eV Total energy + Delta-G solvation = -1920.782798 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.01612 -35.77921 -34.25120 -32.75110 -31.28015 -27.79322 -27.09604 -24.52052 -21.17805 -20.01197 -18.90613 -17.35298 -16.48007 -16.26181 -15.05856 -14.83851 -14.53433 -13.93038 -13.89648 -13.82451 -13.26348 -13.11187 -12.86619 -12.46655 -12.19601 -11.87388 -11.62100 -11.18067 -10.76763 -9.82296 -9.28636 -8.28202 -6.33568 1.06546 1.38545 1.42061 1.54393 1.84536 2.00289 2.38423 3.05915 3.79103 3.88027 4.30302 4.39317 4.45237 4.65549 4.74619 4.81842 4.92246 5.00522 5.11756 5.18835 5.42461 5.59036 5.83304 6.28214 6.38230 6.70064 7.03342 7.28373 8.89501 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.070664 B = 0.010446 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.143652 B = 2679.891747 C = 2891.103529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.082 3.918 3 C -0.305 4.305 4 C 0.084 3.916 5 C 0.061 3.939 6 C -0.520 4.520 7 H 0.018 0.982 8 C 0.004 3.996 9 N -0.953 5.953 10 Si 0.960 3.040 11 H -0.257 1.257 12 H -0.281 1.281 13 H -0.246 1.246 14 N -0.347 5.347 15 N -0.391 5.391 16 C 0.094 3.906 17 H 0.090 0.910 18 H 0.100 0.900 19 H 0.093 0.907 20 H 0.159 0.841 21 H 0.033 0.967 22 H 0.051 0.949 23 H 0.268 0.732 24 H 0.078 0.922 25 H 0.124 0.876 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.009 -2.270 -7.475 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C -0.334 4.334 4 C -0.081 4.081 5 C 0.022 3.978 6 C -0.559 4.559 7 H 0.037 0.963 8 C -0.193 4.193 9 N -0.594 5.594 10 Si 0.781 3.219 11 H -0.181 1.181 12 H -0.207 1.207 13 H -0.169 1.169 14 N -0.170 5.170 15 N -0.174 5.174 16 C -0.046 4.046 17 H 0.109 0.891 18 H 0.118 0.882 19 H 0.111 0.889 20 H 0.176 0.824 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.142 0.858 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.202 -3.471 -7.391 17.256 hybrid contribution 0.460 0.941 0.168 1.061 sum -14.742 -2.531 -7.222 16.610 Atomic orbital electron populations 1.20573 0.83289 1.05482 1.04449 1.21810 0.96645 0.86402 0.99829 1.21494 0.91076 1.00521 1.20293 1.22652 0.96852 0.91744 0.96834 1.18082 0.89398 0.94001 0.96294 1.21120 1.05222 1.18478 1.11033 0.96339 1.26074 0.95703 1.00245 0.97255 1.70078 1.13768 1.43800 1.31734 0.85527 0.77473 0.78827 0.80038 1.18112 1.20688 1.16918 1.77354 0.97757 1.13852 1.28003 1.48924 1.03293 1.07614 1.57559 1.22111 1.02161 0.76217 1.04097 0.89131 0.88176 0.88863 0.82364 0.94874 0.93110 0.92293 0.90370 0.85789 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.12 71.24 0.72 -0.67 15 2 C 0.08 2.60 6.93 41.41 0.29 2.89 15 3 C -0.30 -11.90 10.64 21.99 0.23 -11.66 15 4 C 0.08 4.14 6.43 43.10 0.28 4.42 15 5 C 0.06 3.23 4.62 29.10 0.13 3.36 15 6 C -0.52 -32.94 9.62 25.60 0.25 -32.69 15 7 H 0.02 1.32 7.98 -2.91 -0.02 1.30 15 8 C 0.00 0.22 5.47 84.65 0.46 0.68 15 9 N -0.95 -62.74 13.96 21.45 0.30 -62.44 15 10 Si 0.96 45.58 27.47 68.60 1.88 47.46 15 11 H -0.26 -11.38 7.11 99.48 0.71 -10.67 15 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 15 13 H -0.25 -10.86 6.54 99.48 0.65 -10.21 15 14 N -0.35 -17.07 12.54 -47.38 -0.59 -17.66 15 15 N -0.39 -14.13 4.01 -356.02 -1.43 -15.56 15 16 C 0.09 2.17 11.27 127.77 1.44 3.61 15 17 H 0.09 1.38 8.14 -2.39 -0.02 1.36 15 18 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 19 H 0.09 1.11 7.08 -2.39 -0.02 1.09 15 20 H 0.16 5.27 8.06 -2.91 -0.02 5.25 15 21 H 0.03 1.73 7.20 -2.39 -0.02 1.71 15 22 H 0.05 2.44 7.55 -2.39 -0.02 2.43 15 23 H 0.27 16.25 8.31 -92.71 -0.77 15.48 15 24 H 0.08 1.64 8.14 -2.39 -0.02 1.63 15 25 H 0.12 1.69 7.05 -2.39 -0.02 1.67 15 26 H 0.08 1.94 8.14 -2.38 -0.02 1.92 15 Total: -1.00 -81.28 229.62 5.06 -76.22 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.10 Total: 2.05 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 3.80 Total: -30.07 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -1.72 Total: -95.67 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.46 kcal Total: -81.28 5.06 -76.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606246078.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.466 kcal (2) G-P(sol) polarization free energy of solvation -81.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds