Wall clock time and date at job start Mon Mar 30 2020 02:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 N 1.35499 * 179.97438 * 2 1 4 4 C 1.46935 * 120.63146 * 136.50806 * 3 2 1 5 5 C 1.53183 * 108.77721 * 126.41223 * 4 3 2 6 6 C 1.53045 * 109.31600 * 54.63511 * 5 4 3 7 7 C 1.53037 * 109.53555 * 298.63737 * 6 5 4 8 8 H 1.09002 * 109.52452 * 301.39695 * 7 6 5 9 9 C 1.50708 * 109.49846 * 181.31706 * 7 6 5 10 10 H 1.08000 * 119.99647 * 334.69166 * 9 7 6 11 11 C 1.37871 * 120.00113 * 154.69256 * 9 7 6 12 12 N 1.31516 * 120.00273 * 6.45489 * 11 9 7 13 13 Si 1.86803 * 119.99949 * 186.45163 * 11 9 7 14 14 H 1.48491 * 109.47277 * 180.02562 * 13 11 9 15 15 H 1.48496 * 109.47022 * 300.00172 * 13 11 9 16 16 H 1.48501 * 109.46792 * 59.99885 * 13 11 9 17 17 C 1.46929 * 120.63337 * 316.52773 * 3 2 1 18 18 H 1.09000 * 109.58245 * 246.20015 * 4 3 2 19 19 H 1.08996 * 109.58375 * 6.47761 * 4 3 2 20 20 H 1.08997 * 109.50031 * 174.58642 * 5 4 3 21 21 H 1.09004 * 109.49928 * 294.65018 * 5 4 3 22 22 H 1.08996 * 109.46437 * 178.61550 * 6 5 4 23 23 H 1.09000 * 109.45938 * 58.65300 * 6 5 4 24 24 H 0.97000 * 120.00051 * 355.04425 * 12 11 9 25 25 H 1.08997 * 109.58779 * 113.80224 * 17 3 2 26 26 H 1.08997 * 109.58571 * 353.37463 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 7 2.4910 0.0006 0.0000 4 6 3.2392 0.9182 -0.8702 5 6 4.2309 1.7115 -0.0135 6 6 5.1089 0.7383 0.7765 7 6 4.2318 -0.1025 1.7069 8 1 3.6841 0.5539 2.3831 9 6 5.1005 -1.0380 2.5079 10 1 6.0622 -1.3440 2.1234 11 6 4.6674 -1.5031 3.7314 12 7 3.4474 -1.2346 4.1427 13 14 5.8135 -2.5149 4.8049 14 1 5.1133 -2.8911 6.0592 15 1 6.2176 -3.7441 4.0763 16 1 7.0205 -1.7141 5.1322 17 6 3.2401 -0.9165 0.8698 18 1 3.7822 0.3466 -1.6229 19 1 2.5471 1.6028 -1.3603 20 1 4.8586 2.3261 -0.6587 21 1 3.6833 2.3518 0.6781 22 1 5.8318 1.2998 1.3683 23 1 5.6374 0.0824 0.0847 24 1 2.8768 -0.6502 3.6195 25 1 3.7832 -1.6376 0.2590 26 1 2.5488 -1.4407 1.5297 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606246362.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:17 Heat of formation + Delta-G solvation = 18.492216 kcal Electronic energy + Delta-G solvation = -10661.939078 eV Core-core repulsion = 8740.126230 eV Total energy + Delta-G solvation = -1921.812848 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.44012 -35.47518 -33.47111 -31.74719 -29.89469 -24.81385 -24.38115 -21.99432 -19.97715 -17.85762 -16.69723 -14.93562 -14.30281 -14.14062 -13.80498 -13.59840 -13.23374 -12.53755 -12.02489 -11.86979 -11.52775 -11.42321 -10.86262 -10.66627 -10.47512 -10.17428 -10.05369 -9.40199 -8.65479 -8.53568 -7.72565 -6.46992 -4.20487 3.10601 3.36289 3.39576 3.41945 3.59851 3.75600 4.45568 5.15115 5.26421 5.37282 5.54643 5.78420 5.95434 6.09925 6.21100 6.41434 6.55968 6.60287 6.69985 6.99635 7.26121 7.29489 7.48484 8.11093 8.32960 8.75361 8.79482 9.52555 10.91446 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.051452 B = 0.013257 C = 0.011170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.065539 B = 2111.546075 C = 2506.196986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.423 3.577 3 N -0.580 5.580 4 C 0.141 3.859 5 C -0.139 4.139 6 C -0.103 4.103 7 C 0.019 3.981 8 H 0.036 0.964 9 C -0.597 4.597 10 H 0.054 0.946 11 C 0.022 3.978 12 N -0.905 5.905 13 Si 1.068 2.932 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.287 1.287 17 C 0.137 3.863 18 H 0.065 0.935 19 H 0.068 0.932 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.271 0.729 25 H 0.059 0.941 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 3.081 -7.078 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C 0.020 3.980 3 N -0.306 5.306 4 C 0.018 3.982 5 C -0.177 4.177 6 C -0.141 4.141 7 C 0.000 4.000 8 H 0.054 0.946 9 C -0.636 4.636 10 H 0.072 0.928 11 C -0.184 4.184 12 N -0.540 5.540 13 Si 0.896 3.104 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.213 1.213 17 C 0.016 3.984 18 H 0.083 0.917 19 H 0.087 0.913 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.383 2.218 -5.652 6.523 hybrid contribution 0.459 0.843 -1.420 1.714 sum 2.842 3.062 -7.072 8.213 Atomic orbital electron populations 1.81799 1.06331 1.14486 1.15712 1.24043 0.87084 0.93618 0.93233 1.45248 0.95573 1.42895 1.46870 1.21513 0.93841 0.91261 0.91623 1.22044 0.97998 0.98495 0.99173 1.21540 0.97757 0.96959 0.97846 1.19242 0.93170 0.94673 0.92964 0.94618 1.21885 1.04885 1.31958 1.04828 0.92807 1.25909 0.97843 0.97980 0.96658 1.70825 1.06602 1.33554 1.43051 0.83549 0.74796 0.75846 0.76223 1.20792 1.21352 1.21318 1.22489 0.93859 0.91310 0.90731 0.91659 0.91337 0.91676 0.91974 0.92518 0.93020 0.91767 0.92268 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.18 18.54 41.27 0.77 -9.42 15 2 C 0.42 8.41 15.67 -102.19 -1.60 6.81 15 3 N -0.58 -10.75 2.99 -131.02 -0.39 -11.15 15 4 C 0.14 2.07 6.51 -3.71 -0.02 2.05 15 5 C -0.14 -2.09 6.08 -26.61 -0.16 -2.25 15 6 C -0.10 -1.91 5.15 -26.69 -0.14 -2.05 15 7 C 0.02 0.44 1.87 -91.65 -0.17 0.27 15 8 H 0.04 0.91 6.96 -51.93 -0.36 0.55 15 9 C -0.60 -15.42 8.31 -34.44 -0.29 -15.71 15 10 H 0.05 1.37 7.82 -52.49 -0.41 0.96 15 11 C 0.02 0.58 5.45 -17.82 -0.10 0.49 15 12 N -0.91 -26.23 13.63 55.43 0.76 -25.48 15 13 Si 1.07 23.92 29.91 -169.99 -5.08 18.84 15 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 15 H -0.29 -6.14 7.11 56.52 0.40 -5.74 15 16 H -0.29 -6.14 7.11 56.52 0.40 -5.74 15 17 C 0.14 2.90 5.70 -3.71 -0.02 2.88 15 18 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 19 H 0.07 0.88 7.93 -51.93 -0.41 0.47 15 20 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.27 7.86 6.29 -40.82 -0.26 7.60 15 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 26 H 0.07 1.67 7.47 -51.93 -0.39 1.29 15 LS Contribution 226.45 15.07 3.41 3.41 Total: -1.00 -28.46 226.45 -6.20 -34.66 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -3.16 Total: -3.35 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.50 Total: -7.52 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 1.13 Total: -46.04 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.08 Total: 18.84 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.46 -6.20 -34.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606246362.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.156 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds