Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 N 1.35501 * 179.97438 * 2 1 4 4 C 1.46926 * 120.63417 * 356.65127 * 3 2 1 5 5 C 1.53191 * 108.77563 * 233.59226 * 4 3 2 6 6 C 1.53035 * 109.33774 * 305.37667 * 5 4 3 7 7 C 1.53035 * 109.53902 * 61.31958 * 6 5 4 8 8 H 1.09005 * 109.49964 * 58.65309 * 7 6 5 9 9 C 1.50706 * 109.50076 * 178.71508 * 7 6 5 10 10 H 1.08000 * 119.99302 * 359.93638 * 9 7 6 11 11 C 1.37871 * 120.00436 * 179.66171 * 9 7 6 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46683 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99743 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99986 * 13 11 9 17 17 C 1.46926 * 120.62805 * 176.63406 * 3 2 1 18 18 H 1.09005 * 109.58684 * 353.37479 * 4 3 2 19 19 H 1.08993 * 109.58789 * 113.80143 * 4 3 2 20 20 H 1.08999 * 109.50263 * 65.31722 * 5 4 3 21 21 H 1.09007 * 109.49729 * 185.38272 * 5 4 3 22 22 H 1.08996 * 109.43500 * 301.31335 * 6 5 4 23 23 H 1.08997 * 109.48719 * 181.35667 * 6 5 4 24 24 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 25 25 H 1.08993 * 109.58715 * 6.62147 * 17 3 2 26 26 H 1.09007 * 109.58223 * 246.19630 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 7 2.4910 0.0006 0.0000 4 6 3.2402 -1.2611 0.0738 5 6 4.2321 -1.1781 1.2383 6 6 5.1091 0.0646 1.0693 7 6 4.2310 1.3177 1.0918 8 1 3.6835 1.3615 2.0334 9 6 5.0986 2.5425 0.9570 10 1 6.1696 2.4381 0.8656 11 6 4.5247 3.7961 0.9448 12 7 3.2199 3.9229 1.0502 13 14 5.6001 5.3142 0.7770 14 1 7.0235 4.9036 0.6749 15 1 5.2117 6.0634 -0.4449 16 1 5.4200 6.1824 1.9682 17 6 3.2389 1.2630 -0.0742 18 1 2.5490 -2.0873 0.2409 19 1 3.7830 -1.4188 -0.8580 20 1 3.6847 -1.1115 2.1785 21 1 4.8602 -2.0690 1.2454 22 1 5.6378 0.0087 0.1178 23 1 5.8319 0.1130 1.8838 24 1 2.8160 4.8048 1.0412 25 1 2.5470 2.1023 -0.0050 26 1 3.7817 1.3111 -1.0183 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606246363.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = 22.811076 kcal Electronic energy + Delta-G solvation = -10671.922066 eV Core-core repulsion = 8750.296498 eV Total energy + Delta-G solvation = -1921.625568 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.22168 -35.27366 -33.21948 -31.65088 -29.90859 -25.21559 -24.15950 -21.90594 -19.60469 -17.62132 -16.28028 -14.74883 -14.60145 -14.08287 -13.91295 -13.14087 -12.82065 -12.39769 -12.16467 -11.80144 -11.39536 -11.04684 -10.98859 -10.53982 -10.42272 -10.29463 -9.94632 -9.24199 -9.06322 -8.53203 -7.54427 -6.13002 -4.19891 3.22935 3.32370 3.34822 3.36760 3.56570 3.94229 4.34949 5.19565 5.30112 5.49426 5.66246 5.94370 6.10552 6.26884 6.46520 6.59284 6.73794 6.85342 6.89559 7.20833 7.54394 7.57636 7.75565 7.93473 8.30585 8.85303 8.99648 9.46664 10.93609 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.049651 B = 0.013904 C = 0.011349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.797591 B = 2013.321922 C = 2466.498125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.428 3.572 3 N -0.579 5.579 4 C 0.139 3.861 5 C -0.137 4.137 6 C -0.110 4.110 7 C 0.035 3.965 8 H 0.032 0.968 9 C -0.515 4.515 10 H 0.061 0.939 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.135 3.865 18 H 0.066 0.934 19 H 0.064 0.936 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.263 0.737 25 H 0.106 0.894 26 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -6.758 -1.481 7.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C 0.026 3.974 3 N -0.305 5.305 4 C 0.016 3.984 5 C -0.175 4.175 6 C -0.147 4.147 7 C 0.016 3.984 8 H 0.050 0.950 9 C -0.554 4.554 10 H 0.080 0.920 11 C -0.141 4.141 12 N -0.529 5.529 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.210 1.210 17 C 0.015 3.985 18 H 0.084 0.916 19 H 0.082 0.918 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.124 0.876 26 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.982 -6.606 -1.487 7.056 hybrid contribution 1.048 0.955 -0.050 1.419 sum 3.030 -5.651 -1.537 6.594 Atomic orbital electron populations 1.81764 1.06450 1.06580 1.24361 1.23986 0.87087 0.95450 0.90854 1.45261 0.95599 1.08959 1.80644 1.21496 0.93820 0.84342 0.98744 1.22011 0.97976 0.99257 0.98284 1.21600 0.97851 0.94579 1.00710 1.19051 0.92827 0.91848 0.94690 0.94963 1.21173 0.93456 0.90179 1.50599 0.92038 1.25048 0.95041 0.99298 0.94707 1.69848 1.09376 1.23719 1.49955 0.86482 0.80687 0.82818 0.77741 1.19669 1.20940 1.20971 1.22328 0.95345 0.81616 0.99252 0.91577 0.91801 0.91990 0.91925 0.92957 0.92863 0.92652 0.87644 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.76 18.54 41.27 0.77 -10.00 15 2 C 0.43 8.92 15.67 -102.19 -1.60 7.32 15 3 N -0.58 -11.25 2.99 -131.02 -0.39 -11.65 15 4 C 0.14 2.13 6.51 -3.71 -0.02 2.10 15 5 C -0.14 -2.09 6.08 -26.61 -0.16 -2.25 15 6 C -0.11 -2.03 5.11 -26.69 -0.14 -2.17 15 7 C 0.04 0.82 2.25 -91.65 -0.21 0.61 15 8 H 0.03 0.84 8.14 -51.93 -0.42 0.41 15 9 C -0.52 -13.17 8.57 -34.44 -0.30 -13.47 15 10 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 11 C 0.06 1.60 5.30 -17.82 -0.09 1.51 15 12 N -0.89 -24.53 11.37 55.43 0.63 -23.90 15 13 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 15 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 17 C 0.13 3.00 5.47 -3.71 -0.02 2.98 15 18 H 0.07 0.89 7.93 -51.93 -0.41 0.48 15 19 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 25 H 0.11 2.70 6.03 -51.93 -0.31 2.39 15 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 LS Contribution 225.73 15.07 3.40 3.40 Total: -1.00 -27.46 225.73 -6.38 -33.84 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -3.23 Total: -3.66 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.54 Total: -3.36 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 1.00 Total: -45.55 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.46 -6.38 -33.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606246363.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.652 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds