Wall clock time and date at job start Mon Mar 30 2020 02:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 N 1.35501 * 179.97438 * 2 1 4 4 C 1.46926 * 120.63417 * 356.65127 * 3 2 1 5 5 C 1.53191 * 108.77563 * 233.59226 * 4 3 2 6 6 C 1.53035 * 109.33774 * 305.37667 * 5 4 3 7 7 C 1.53035 * 109.53902 * 61.31958 * 6 5 4 8 8 H 1.09005 * 109.49964 * 58.65309 * 7 6 5 9 9 C 1.50706 * 109.50076 * 178.71508 * 7 6 5 10 10 H 1.08000 * 119.99302 * 359.93638 * 9 7 6 11 11 C 1.37871 * 120.00436 * 179.66171 * 9 7 6 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46683 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99743 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99986 * 13 11 9 17 17 C 1.46926 * 120.62805 * 176.63406 * 3 2 1 18 18 H 1.09005 * 109.58684 * 353.37479 * 4 3 2 19 19 H 1.08993 * 109.58789 * 113.80143 * 4 3 2 20 20 H 1.08999 * 109.50263 * 65.31722 * 5 4 3 21 21 H 1.09007 * 109.49729 * 185.38272 * 5 4 3 22 22 H 1.08996 * 109.43500 * 301.31335 * 6 5 4 23 23 H 1.08997 * 109.48719 * 181.35667 * 6 5 4 24 24 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 25 25 H 1.08993 * 109.58715 * 6.62147 * 17 3 2 26 26 H 1.09007 * 109.58223 * 246.19630 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 7 2.4910 0.0006 0.0000 4 6 3.2402 -1.2611 0.0738 5 6 4.2321 -1.1781 1.2383 6 6 5.1091 0.0646 1.0693 7 6 4.2310 1.3177 1.0918 8 1 3.6835 1.3615 2.0334 9 6 5.0986 2.5425 0.9570 10 1 6.1696 2.4381 0.8656 11 6 4.5247 3.7961 0.9448 12 7 3.2199 3.9229 1.0502 13 14 5.6001 5.3142 0.7770 14 1 7.0235 4.9036 0.6749 15 1 5.2117 6.0634 -0.4449 16 1 5.4200 6.1824 1.9682 17 6 3.2389 1.2630 -0.0742 18 1 2.5490 -2.0873 0.2409 19 1 3.7830 -1.4188 -0.8580 20 1 3.6847 -1.1115 2.1785 21 1 4.8602 -2.0690 1.2454 22 1 5.6378 0.0087 0.1178 23 1 5.8319 0.1130 1.8838 24 1 2.8160 4.8048 1.0412 25 1 2.5470 2.1023 -0.0050 26 1 3.7817 1.3111 -1.0183 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606246363.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:18 Heat of formation + Delta-G solvation = 9.523762 kcal Electronic energy + Delta-G solvation = -10672.498247 eV Core-core repulsion = 8750.296498 eV Total energy + Delta-G solvation = -1922.201749 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.78280 -36.95369 -35.05886 -33.22567 -31.58267 -27.07702 -25.72716 -23.45905 -21.22747 -19.18511 -18.21958 -16.55217 -16.23653 -15.64815 -15.40358 -14.72852 -14.48462 -14.15903 -13.71205 -13.31269 -13.07929 -12.85490 -12.67443 -12.25051 -12.17292 -11.73887 -11.54148 -10.97878 -10.85731 -10.50954 -9.13204 -8.12308 -6.25890 1.43076 1.47059 1.57446 1.74241 1.94284 2.28611 2.44926 3.18814 4.03896 4.22713 4.38836 4.64477 4.67575 4.82821 4.88543 5.14331 5.24746 5.26507 5.38472 5.53488 5.67468 5.91318 5.95810 6.10147 6.41496 6.88088 7.35656 7.44512 8.92710 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.049651 B = 0.013904 C = 0.011349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.797591 B = 2013.321922 C = 2466.498125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.432 3.568 3 N -0.577 5.577 4 C 0.132 3.868 5 C -0.128 4.128 6 C -0.105 4.105 7 C 0.032 3.968 8 H -0.007 1.007 9 C -0.527 4.527 10 H 0.065 0.935 11 C 0.012 3.988 12 N -0.922 5.922 13 Si 0.955 3.045 14 H -0.261 1.261 15 H -0.282 1.282 16 H -0.287 1.287 17 C 0.149 3.851 18 H 0.090 0.910 19 H 0.090 0.910 20 H 0.049 0.951 21 H 0.105 0.895 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.261 0.739 25 H 0.067 0.933 26 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -8.012 -2.002 9.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.215 5.215 2 C 0.030 3.970 3 N -0.303 5.303 4 C 0.011 3.989 5 C -0.167 4.167 6 C -0.142 4.142 7 C 0.012 3.988 8 H 0.011 0.989 9 C -0.565 4.565 10 H 0.083 0.917 11 C -0.187 4.187 12 N -0.562 5.562 13 Si 0.781 3.219 14 H -0.185 1.185 15 H -0.208 1.208 16 H -0.213 1.213 17 C 0.027 3.973 18 H 0.109 0.891 19 H 0.108 0.892 20 H 0.068 0.932 21 H 0.124 0.876 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.384 -7.892 -2.007 8.819 hybrid contribution 0.634 1.332 0.137 1.482 sum 4.019 -6.560 -1.870 7.917 Atomic orbital electron populations 1.81752 1.07146 1.07275 1.25301 1.24110 0.87469 0.94867 0.90514 1.45364 0.95007 1.09674 1.80265 1.21890 0.94130 0.82834 1.00042 1.21969 0.97809 0.99237 0.97664 1.21506 0.97565 0.93783 1.01380 1.19015 0.93154 0.93644 0.92957 0.98884 1.21581 0.93959 0.91314 1.49667 0.91709 1.25808 0.96009 1.02200 0.94689 1.70006 1.10953 1.23980 1.51272 0.85534 0.79590 0.79406 0.77325 1.18502 1.20845 1.21285 1.21883 0.94434 0.81865 0.99132 0.89131 0.89163 0.93239 0.87625 0.91743 0.92889 0.93012 0.91466 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.33 18.54 17.21 0.32 -22.02 15 2 C 0.43 17.73 15.67 184.39 2.89 20.62 15 3 N -0.58 -21.69 2.99 -568.44 -1.70 -23.39 15 4 C 0.13 3.57 6.51 86.36 0.56 4.14 15 5 C -0.13 -3.49 6.08 30.67 0.19 -3.30 15 6 C -0.10 -3.64 5.11 30.62 0.16 -3.49 15 7 C 0.03 1.47 2.25 -11.46 -0.03 1.44 15 8 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 15 9 C -0.53 -26.84 8.57 25.60 0.22 -26.62 15 10 H 0.06 3.19 7.74 -2.91 -0.02 3.16 15 11 C 0.01 0.62 5.30 84.65 0.45 1.06 15 12 N -0.92 -52.05 11.37 21.45 0.24 -51.80 15 13 Si 0.96 41.77 29.54 68.60 2.03 43.79 15 14 H -0.26 -10.84 7.11 99.48 0.71 -10.13 15 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 16 H -0.29 -12.58 7.11 99.48 0.71 -11.88 15 17 C 0.15 6.60 5.47 86.36 0.47 7.07 15 18 H 0.09 2.06 7.93 -2.38 -0.02 2.05 15 19 H 0.09 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.11 2.06 8.14 -2.38 -0.02 2.04 15 22 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.26 14.17 8.31 -92.71 -0.77 13.40 15 25 H 0.07 3.53 6.03 -2.39 -0.01 3.51 15 26 H 0.06 2.39 8.14 -2.38 -0.02 2.37 15 Total: -1.00 -59.46 225.73 6.96 -52.51 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: 1.16 Total: -0.02 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 4.91 Total: 0.93 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -1.14 Total: -97.21 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -59.46 6.96 -52.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606246363.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.031 kcal (2) G-P(sol) polarization free energy of solvation -59.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds