Wall clock time and date at job start Mon Mar 30 2020 02:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47209 * 2 1 4 4 C 1.35896 * 124.86048 * 125.00147 * 3 2 1 5 5 C 1.35075 * 107.37781 * 180.02562 * 4 3 2 6 6 C 1.50699 * 127.22621 * 180.02562 * 5 4 3 7 7 C 1.42230 * 105.54732 * 0.25365 * 5 4 3 8 8 C 1.41428 * 126.56866 * 179.70358 * 7 5 4 9 9 H 1.08003 * 119.99698 * 354.36111 * 8 7 5 10 10 C 1.39851 * 120.00018 * 174.35172 * 8 7 5 11 11 N 1.30892 * 119.99868 * 6.02680 * 10 8 7 12 12 Si 1.86802 * 119.99871 * 186.02617 * 10 8 7 13 13 H 1.48500 * 109.47187 * 94.98293 * 12 10 8 14 14 H 1.48498 * 109.46995 * 214.98164 * 12 10 8 15 15 H 1.48497 * 109.47045 * 334.98151 * 12 10 8 16 16 N 1.28478 * 124.86181 * 305.01935 * 3 2 1 17 17 H 1.08991 * 109.47520 * 300.00228 * 1 2 3 18 18 H 1.09005 * 109.46911 * 60.00441 * 1 2 3 19 19 H 1.09006 * 109.47209 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47037 * 239.99740 * 2 1 3 21 21 H 1.08997 * 109.46766 * 120.00212 * 2 1 3 22 22 H 1.08001 * 126.31285 * 0.02562 * 4 3 2 23 23 H 1.09001 * 109.47556 * 90.01605 * 6 5 4 24 24 H 1.08999 * 109.46757 * 330.02214 * 6 5 4 25 25 H 1.09000 * 109.47100 * 210.01827 * 6 5 4 26 26 H 0.97004 * 119.99942 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8803 1.9003 0.9134 5 6 3.0899 3.1927 0.5813 6 6 3.9710 4.1859 1.2943 7 6 2.3002 3.4210 -0.5794 8 6 2.1862 4.6352 -1.2956 9 1 2.6597 5.5302 -0.9198 10 6 1.4607 4.6768 -2.4904 11 7 0.7896 3.6247 -2.8855 12 14 1.4492 6.2338 -3.5224 13 1 2.4942 6.1389 -4.5732 14 1 0.1182 6.3946 -4.1610 15 1 1.7261 7.4057 -2.6534 16 7 1.6928 2.2752 -0.8633 17 1 -0.3634 0.5138 0.8899 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 1.8933 -0.5139 -0.8900 21 1 1.8933 -0.5139 0.8900 22 1 3.3172 1.3762 1.7505 23 1 4.9767 4.1453 0.8761 24 1 4.0089 3.9413 2.3559 25 1 3.5646 5.1892 1.1668 26 1 0.2860 3.6537 -3.7141 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000669381899.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:27 Heat of formation + Delta-G solvation = 63.281384 kcal Electronic energy + Delta-G solvation = -10637.658197 eV Core-core repulsion = 8717.787553 eV Total energy + Delta-G solvation = -1919.870644 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.31744 -34.01127 -32.59658 -30.63684 -28.72672 -25.90970 -25.26881 -22.06768 -19.33989 -18.65338 -16.52472 -15.50354 -14.62031 -14.33186 -13.31582 -12.90794 -12.44424 -12.33647 -11.85429 -11.54323 -11.26215 -11.06875 -10.96573 -10.64429 -10.57058 -10.22253 -9.66800 -9.04876 -8.20340 -7.27718 -7.08820 -6.16139 -3.99005 3.22568 3.30953 3.35008 3.61213 4.15854 4.31036 4.51741 5.35383 5.63311 5.76862 5.83724 5.97405 6.13296 6.33434 6.37724 6.59912 6.71307 6.76668 6.95979 7.38024 7.53426 7.64912 7.99803 8.50838 8.84084 9.16065 9.41740 10.45943 10.82764 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.042324 B = 0.015643 C = 0.011749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.403048 B = 1789.451624 C = 2382.681269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 N -0.337 5.337 4 C -0.049 4.049 5 C -0.266 4.266 6 C -0.048 4.048 7 C 0.193 3.807 8 C -0.448 4.448 9 H 0.077 0.923 10 C 0.072 3.928 11 N -0.785 5.785 12 Si 0.900 3.100 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.266 1.266 16 N -0.325 5.325 17 H 0.052 0.948 18 H 0.076 0.924 19 H 0.057 0.943 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.137 0.863 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -3.778 4.334 5.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 N -0.121 5.121 4 C -0.193 4.193 5 C -0.279 4.279 6 C -0.106 4.106 7 C 0.043 3.957 8 C -0.487 4.487 9 H 0.095 0.905 10 C -0.145 4.145 11 N -0.414 5.414 12 Si 0.726 3.274 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.191 1.191 16 N -0.157 5.157 17 H 0.072 0.928 18 H 0.095 0.905 19 H 0.076 0.924 20 H 0.086 0.914 21 H 0.092 0.908 22 H 0.154 0.846 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.296 -4.602 3.437 5.752 hybrid contribution 0.553 0.938 0.084 1.092 sum 0.849 -3.664 3.521 5.152 Atomic orbital electron populations 1.21982 0.94880 1.00993 1.03821 1.21255 0.95396 0.80136 1.01504 1.45471 1.35492 1.09757 1.21382 1.22098 1.02438 0.95725 0.99084 1.20320 1.09356 0.94604 1.03587 1.19700 0.96882 0.97465 0.96565 1.19246 0.92374 0.92504 0.91595 1.18481 1.31248 0.93736 1.05231 0.90536 1.25716 0.94312 0.96626 0.97837 1.69994 1.23139 1.28476 1.19791 0.86446 0.77674 0.82981 0.80272 1.20166 1.20842 1.19052 1.74651 1.27350 0.98191 1.15476 0.92845 0.90483 0.92380 0.91448 0.90753 0.84550 0.94024 0.94477 0.92713 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.02 37.16 0.37 -2.36 15 2 C 0.14 2.54 7.12 -4.04 -0.03 2.51 15 3 N -0.34 -8.12 3.43 -61.18 -0.21 -8.33 15 4 C -0.05 -1.13 11.36 -16.88 -0.19 -1.33 15 5 C -0.27 -6.70 6.26 -104.22 -0.65 -7.35 15 6 C -0.05 -0.99 10.27 36.01 0.37 -0.62 15 7 C 0.19 5.64 6.78 -84.72 -0.57 5.07 15 8 C -0.45 -13.10 9.22 -37.76 -0.35 -13.45 15 9 H 0.08 2.12 7.48 -52.48 -0.39 1.73 15 10 C 0.07 2.04 5.49 -17.35 -0.10 1.94 15 11 N -0.78 -23.11 12.00 55.54 0.67 -22.44 15 12 Si 0.90 20.72 29.56 -169.99 -5.03 15.70 15 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 16 N -0.32 -9.38 9.95 32.34 0.32 -9.05 15 17 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 18 H 0.08 1.57 8.08 -51.93 -0.42 1.15 15 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.07 1.19 8.14 -51.93 -0.42 0.76 15 21 H 0.07 1.08 8.04 -51.93 -0.42 0.66 15 22 H 0.14 2.54 8.06 -52.49 -0.42 2.12 15 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.05 1.13 7.73 -51.93 -0.40 0.73 15 26 H 0.26 7.18 8.30 -40.82 -0.34 6.84 15 LS Contribution 231.18 15.07 3.48 3.48 Total: -1.00 -32.98 231.18 -5.21 -38.19 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -3.30 Total: -1.96 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.15 Total: -15.59 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.78 Total: -39.83 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.98 -5.21 -38.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669381899.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.475 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds