Wall clock time and date at job start Mon Mar 30 2020 02:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47209 * 2 1 4 4 C 1.35896 * 124.86048 * 125.00147 * 3 2 1 5 5 C 1.35075 * 107.37781 * 180.02562 * 4 3 2 6 6 C 1.50699 * 127.22621 * 180.02562 * 5 4 3 7 7 C 1.42230 * 105.54732 * 0.25365 * 5 4 3 8 8 C 1.41428 * 126.56866 * 179.70358 * 7 5 4 9 9 H 1.08003 * 119.99698 * 354.36111 * 8 7 5 10 10 C 1.39851 * 120.00018 * 174.35172 * 8 7 5 11 11 N 1.30892 * 119.99868 * 6.02680 * 10 8 7 12 12 Si 1.86802 * 119.99871 * 186.02617 * 10 8 7 13 13 H 1.48500 * 109.47187 * 94.98293 * 12 10 8 14 14 H 1.48498 * 109.46995 * 214.98164 * 12 10 8 15 15 H 1.48497 * 109.47045 * 334.98151 * 12 10 8 16 16 N 1.28478 * 124.86181 * 305.01935 * 3 2 1 17 17 H 1.08991 * 109.47520 * 300.00228 * 1 2 3 18 18 H 1.09005 * 109.46911 * 60.00441 * 1 2 3 19 19 H 1.09006 * 109.47209 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47037 * 239.99740 * 2 1 3 21 21 H 1.08997 * 109.46766 * 120.00212 * 2 1 3 22 22 H 1.08001 * 126.31285 * 0.02562 * 4 3 2 23 23 H 1.09001 * 109.47556 * 90.01605 * 6 5 4 24 24 H 1.08999 * 109.46757 * 330.02214 * 6 5 4 25 25 H 1.09000 * 109.47100 * 210.01827 * 6 5 4 26 26 H 0.97004 * 119.99942 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8803 1.9003 0.9134 5 6 3.0899 3.1927 0.5813 6 6 3.9710 4.1859 1.2943 7 6 2.3002 3.4210 -0.5794 8 6 2.1862 4.6352 -1.2956 9 1 2.6597 5.5302 -0.9198 10 6 1.4607 4.6768 -2.4904 11 7 0.7896 3.6247 -2.8855 12 14 1.4492 6.2338 -3.5224 13 1 2.4942 6.1389 -4.5732 14 1 0.1182 6.3946 -4.1610 15 1 1.7261 7.4057 -2.6534 16 7 1.6928 2.2752 -0.8633 17 1 -0.3634 0.5138 0.8899 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 1.8933 -0.5139 -0.8900 21 1 1.8933 -0.5139 0.8900 22 1 3.3172 1.3762 1.7505 23 1 4.9767 4.1453 0.8761 24 1 4.0089 3.9413 2.3559 25 1 3.5646 5.1892 1.1668 26 1 0.2860 3.6537 -3.7141 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000669381899.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:27 Heat of formation + Delta-G solvation = 41.486566 kcal Electronic energy + Delta-G solvation = -10638.603291 eV Core-core repulsion = 8717.787553 eV Total energy + Delta-G solvation = -1920.815738 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.20989 -35.81894 -34.49822 -32.35732 -30.62810 -27.86315 -27.00005 -23.76845 -21.22326 -20.51086 -18.50154 -17.34684 -16.44913 -16.08468 -14.95924 -14.72024 -14.26314 -13.89580 -13.45344 -13.21050 -12.98311 -12.72851 -12.65555 -12.36441 -12.30552 -12.04254 -11.59252 -11.07715 -10.19724 -9.30671 -8.95853 -8.24001 -6.13675 1.41035 1.42365 1.56839 1.81446 2.35539 2.45092 2.56808 3.66551 3.98048 4.24757 4.36814 4.43049 4.72079 4.79540 4.83416 4.99073 5.11265 5.25341 5.31951 5.41459 5.58594 5.79868 6.03612 6.51077 6.93898 7.08822 7.31274 8.46122 8.76896 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.042324 B = 0.015643 C = 0.011749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.403048 B = 1789.451624 C = 2382.681269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 N -0.344 5.344 4 C -0.036 4.036 5 C -0.297 4.297 6 C -0.042 4.042 7 C 0.145 3.855 8 C -0.483 4.483 9 H 0.078 0.922 10 C 0.020 3.980 11 N -0.827 5.827 12 Si 0.981 3.019 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.257 1.257 16 N -0.362 5.362 17 H 0.046 0.954 18 H 0.033 0.967 19 H 0.103 0.897 20 H 0.070 0.930 21 H 0.123 0.877 22 H 0.188 0.812 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -4.313 5.362 7.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.006 3.994 3 N -0.129 5.129 4 C -0.181 4.181 5 C -0.310 4.310 6 C -0.100 4.100 7 C -0.006 4.006 8 C -0.522 4.522 9 H 0.096 0.904 10 C -0.193 4.193 11 N -0.457 5.457 12 Si 0.803 3.197 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.180 1.180 16 N -0.195 5.195 17 H 0.065 0.935 18 H 0.052 0.948 19 H 0.122 0.878 20 H 0.089 0.911 21 H 0.141 0.859 22 H 0.205 0.795 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.937 -5.150 4.478 6.889 hybrid contribution 0.362 0.951 -0.140 1.027 sum 1.299 -4.199 4.338 6.176 Atomic orbital electron populations 1.21897 0.94388 1.03143 1.01268 1.21761 0.95914 0.77704 1.04033 1.45991 1.35247 1.10990 1.20641 1.22770 1.00782 0.95210 0.99308 1.20883 1.10178 0.96756 1.03144 1.19706 0.96300 0.95822 0.98134 1.19774 0.94141 0.92972 0.93713 1.18853 1.32427 0.94350 1.06571 0.90433 1.26676 0.93424 1.00411 0.98818 1.70132 1.24191 1.30963 1.20445 0.85221 0.77936 0.78355 0.78203 1.19452 1.20053 1.18035 1.74515 1.28302 0.99225 1.17416 0.93491 0.94820 0.87832 0.91132 0.85898 0.79502 0.93075 0.91185 0.93832 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.02 71.98 0.72 -4.20 15 2 C 0.13 4.31 7.12 86.38 0.62 4.92 15 3 N -0.34 -16.25 3.43 -347.48 -1.19 -17.44 15 4 C -0.04 -1.57 11.36 83.33 0.95 -0.63 15 5 C -0.30 -14.82 6.26 -19.60 -0.12 -14.94 15 6 C -0.04 -1.66 10.27 71.24 0.73 -0.93 15 7 C 0.14 8.66 6.78 40.78 0.28 8.93 15 8 C -0.48 -29.13 9.22 23.45 0.22 -28.92 15 9 H 0.08 4.43 7.48 -2.91 -0.02 4.41 15 10 C 0.02 1.13 5.49 85.22 0.47 1.60 15 11 N -0.83 -50.35 12.00 21.81 0.26 -50.09 15 12 Si 0.98 43.46 29.56 68.60 2.03 45.49 15 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 14 H -0.28 -11.73 7.11 99.48 0.71 -11.02 15 15 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 16 N -0.36 -21.33 9.95 -51.61 -0.51 -21.84 15 17 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 18 H 0.03 1.38 8.08 -2.38 -0.02 1.36 15 19 H 0.10 2.43 8.14 -2.38 -0.02 2.41 15 20 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 21 H 0.12 2.99 8.04 -2.39 -0.02 2.97 15 22 H 0.19 6.03 8.06 -2.91 -0.02 6.01 15 23 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.04 1.78 7.73 -2.39 -0.02 1.77 15 26 H 0.27 15.00 8.30 -92.71 -0.77 14.23 15 Total: -1.00 -74.40 231.18 5.59 -68.81 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.15 Total: 9.23 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 3.85 Total: -34.17 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -1.44 Total: -89.36 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.40 5.59 -68.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669381899.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.294 kcal (2) G-P(sol) polarization free energy of solvation -74.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds