Wall clock time and date at job start Mon Mar 30 2020 02:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 14 14 C 1.34950 * 126.04099 * 34.71284 * 13 2 1 15 15 C 1.35315 * 107.74423 * 179.83807 * 14 13 2 16 16 C 1.39871 * 107.92375 * 0.42973 * 15 14 13 17 17 N 1.30831 * 108.19955 * 359.73088 * 16 15 14 18 18 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 19 19 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 22 22 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 23 23 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 24 24 H 1.07998 * 126.12520 * 0.02562 * 14 13 2 25 25 H 1.07999 * 126.03675 * 180.16099 * 15 14 13 26 26 H 1.07996 * 125.89659 * 179.71517 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 7 2.0183 -0.6906 1.1962 14 6 1.4372 -1.7526 1.7927 15 6 2.1966 -2.0928 2.8597 16 6 3.2734 -1.2024 2.9231 17 7 3.1676 -0.3615 1.9264 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 3.1264 -0.7995 -1.2055 22 1 1.6055 -1.7198 -1.2951 23 1 2.9246 -1.8413 -4.7316 24 1 0.5304 -2.2447 1.4736 25 1 2.0028 -2.9053 3.5443 26 1 4.0567 -1.2080 3.6666 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695793100.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:09 Heat of formation + Delta-G solvation = 63.043874 kcal Electronic energy + Delta-G solvation = -10456.286412 eV Core-core repulsion = 8536.405469 eV Total energy + Delta-G solvation = -1919.880943 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.56986 -35.33065 -32.51052 -29.68443 -29.17462 -27.09538 -23.99586 -21.70882 -20.48995 -19.12857 -16.85141 -15.98960 -14.79547 -14.19106 -14.04945 -13.36215 -13.00292 -12.36691 -12.18682 -11.99658 -11.53650 -11.04076 -10.93472 -10.62505 -10.27726 -10.03277 -9.89960 -9.30887 -8.76742 -8.48585 -7.97220 -6.12233 -4.17059 2.53287 3.19537 3.24856 3.33198 3.34604 3.36444 4.36870 5.19289 5.24353 5.35471 5.62652 5.74960 5.91434 6.06642 6.19954 6.42735 6.49713 6.62222 6.67188 7.16797 7.44867 7.52609 7.67297 7.88137 8.20368 8.32994 8.88084 9.47619 10.99120 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.077352 B = 0.010091 C = 0.009660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.892796 B = 2774.015996 C = 2897.777847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.091 0.909 4 C 0.019 3.981 5 C -0.523 4.523 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.345 5.345 14 C 0.057 3.943 15 C -0.295 4.295 16 C 0.026 3.974 17 N -0.301 5.301 18 H 0.089 0.911 19 H 0.057 0.943 20 H 0.044 0.956 21 H 0.025 0.975 22 H 0.022 0.978 23 H 0.262 0.738 24 H 0.166 0.834 25 H 0.138 0.862 26 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 0.147 8.506 9.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 H 0.109 0.891 4 C -0.019 4.019 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.126 5.126 14 C -0.092 4.092 15 C -0.325 4.325 16 C -0.159 4.159 17 N -0.124 5.124 18 H 0.108 0.892 19 H 0.076 0.924 20 H 0.063 0.937 21 H 0.043 0.957 22 H 0.041 0.959 23 H 0.072 0.928 24 H 0.183 0.817 25 H 0.156 0.844 26 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.172 1.129 7.653 8.360 hybrid contribution -0.522 -0.434 -0.489 0.836 sum -3.693 0.695 7.163 8.089 Atomic orbital electron populations 1.22067 0.93835 1.02432 1.02276 1.21830 0.94065 0.97214 0.81824 0.89111 1.19492 0.97371 0.95842 0.89169 1.21075 1.36025 1.08673 0.90395 0.92040 1.25013 0.94880 0.95048 0.99280 1.69983 1.38085 1.21051 1.23735 0.86462 0.78359 0.79987 0.82769 1.19575 1.20889 1.20904 1.49391 1.17821 1.23332 1.22039 1.22446 0.99898 0.91857 0.94978 1.21353 1.00082 1.06971 1.04072 1.23700 0.99467 0.94994 0.97749 1.77306 1.03676 1.24282 1.07111 0.89210 0.92398 0.93712 0.95669 0.95939 0.92793 0.81655 0.84424 0.80921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.64 37.16 0.32 -2.26 15 2 C 0.15 3.17 3.35 -67.93 -0.23 2.94 15 3 H 0.09 1.95 8.14 -51.93 -0.42 1.53 15 4 C 0.02 0.49 4.77 -27.88 -0.13 0.36 15 5 C -0.52 -14.15 8.41 -34.44 -0.29 -14.44 15 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 15 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 8 N -0.89 -26.41 13.29 55.43 0.74 -25.67 15 9 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 15 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 13 N -0.34 -7.02 3.53 -54.86 -0.19 -7.21 15 14 C 0.06 1.00 10.59 -17.22 -0.18 0.82 15 15 C -0.29 -4.74 10.80 -40.01 -0.43 -5.17 15 16 C 0.03 0.44 12.03 -17.37 -0.21 0.23 15 17 N -0.30 -6.24 12.58 30.62 0.39 -5.85 15 18 H 0.09 1.60 6.95 -51.93 -0.36 1.24 15 19 H 0.06 0.95 7.15 -51.93 -0.37 0.58 15 20 H 0.04 0.69 8.14 -51.93 -0.42 0.26 15 21 H 0.02 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.02 0.61 8.14 -51.93 -0.42 0.18 15 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 24 H 0.17 2.42 7.26 -52.49 -0.38 2.04 15 25 H 0.14 1.78 8.06 -52.49 -0.42 1.35 15 26 H 0.17 2.26 8.06 -52.49 -0.42 1.84 15 LS Contribution 229.70 15.07 3.46 3.46 Total: -1.00 -30.82 229.70 -5.04 -35.85 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -3.16 Total: -0.65 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.25 Total: -15.95 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.93 Total: -38.74 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.82 -5.04 -35.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695793100.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.898 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds