Wall clock time and date at job start Mon Mar 30 2020 02:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 H 1.08001 * 120.00311 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99914 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99650 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47375 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46804 * 120.00085 * 9 7 5 12 12 H 1.48499 * 109.46983 * 239.99431 * 9 7 5 13 13 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 14 14 C 1.36885 * 126.39286 * 120.00096 * 13 2 1 15 15 C 1.34665 * 106.81493 * 179.97438 * 14 13 2 16 16 N 1.34129 * 108.02445 * 0.02562 * 15 14 13 17 17 C 1.30498 * 109.25189 * 359.97438 * 16 15 14 18 18 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 19 19 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 20 20 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 22 22 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 23 23 H 0.96998 * 120.00030 * 180.02562 * 8 7 5 24 24 H 1.07999 * 126.59054 * 359.73997 * 14 13 2 25 25 H 1.08008 * 125.98738 * 179.97438 * 15 14 13 26 26 H 1.08006 * 125.64605 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9931 -0.4016 3.7284 8 7 2.6763 -1.5187 3.8512 9 14 1.4994 0.5635 5.2496 10 1 0.7429 1.7750 4.8433 11 1 0.6456 -0.2855 6.1188 12 1 2.7177 0.9682 5.9959 13 7 2.0184 -0.6907 -1.1961 14 6 2.8085 -0.1554 -2.1774 15 6 3.0192 -1.1298 -3.0827 16 7 2.3748 -2.2299 -2.6660 17 6 1.7733 -1.9743 -1.5365 18 1 -0.3633 0.5138 0.8899 19 1 -0.3632 0.5138 -0.8901 20 1 -0.3633 -1.0276 0.0005 21 1 1.6054 -1.7198 1.2952 22 1 3.1263 -0.7995 1.2057 23 1 2.9235 -1.8416 4.7318 24 1 3.1868 0.8553 -2.2195 25 1 3.6039 -1.0408 -3.9865 26 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709999798.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:13 Heat of formation + Delta-G solvation = 45.427833 kcal Electronic energy + Delta-G solvation = -10487.156957 eV Core-core repulsion = 8566.512125 eV Total energy + Delta-G solvation = -1920.644832 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.46258 -35.59225 -32.69473 -30.20883 -28.70101 -27.18361 -24.00629 -21.81391 -20.73783 -19.44861 -16.85220 -15.98983 -14.82216 -14.43674 -14.04225 -13.37051 -13.20063 -12.92162 -12.47556 -12.04375 -11.58910 -11.09516 -11.04495 -10.64869 -10.35895 -9.97602 -9.52685 -9.31650 -8.84023 -8.55056 -7.97661 -6.18602 -4.23980 2.67586 3.20646 3.28464 3.31022 3.50549 3.68915 4.31873 5.17198 5.23644 5.36805 5.45015 5.72185 5.87678 5.91626 6.13699 6.28653 6.50463 6.62429 6.92493 7.23605 7.38457 7.46484 7.70193 7.85871 8.13409 8.61700 8.80983 9.41468 10.92576 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.078627 B = 0.010117 C = 0.009681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.027209 B = 2767.072888 C = 2891.563997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.126 3.874 3 H 0.088 0.912 4 C 0.020 3.980 5 C -0.526 4.526 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.439 5.439 14 C -0.062 4.062 15 C -0.046 4.046 16 N -0.512 5.512 17 C 0.186 3.814 18 H 0.085 0.915 19 H 0.041 0.959 20 H 0.057 0.943 21 H 0.026 0.974 22 H 0.023 0.977 23 H 0.263 0.737 24 H 0.165 0.835 25 H 0.161 0.839 26 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 3.568 -6.560 7.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.024 3.976 3 H 0.106 0.894 4 C -0.018 4.018 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.527 5.527 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.119 5.119 14 C -0.197 4.197 15 C -0.195 4.195 16 N -0.230 5.230 17 C -0.097 4.097 18 H 0.104 0.896 19 H 0.060 0.940 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.042 0.958 23 H 0.073 0.927 24 H 0.183 0.817 25 H 0.178 0.822 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.412 2.783 -6.688 7.635 hybrid contribution -0.083 1.256 1.387 1.874 sum -2.495 4.039 -5.301 7.116 Atomic orbital electron populations 1.22036 0.94030 1.02476 1.01881 1.21974 0.94995 0.97060 0.83553 0.89398 1.19452 0.97101 0.96074 0.89148 1.21049 1.36226 1.08765 0.90402 0.92073 1.25011 0.94819 0.95027 0.99306 1.69976 1.37935 1.20909 1.23866 0.86464 0.78382 0.79986 0.82771 1.19607 1.20832 1.20882 1.46090 1.36135 1.11210 1.18438 1.22682 1.03297 1.01092 0.92671 1.22139 1.05761 0.90117 1.01512 1.70232 1.13296 1.28183 1.11333 1.24751 1.03700 0.85944 0.95261 0.89650 0.93965 0.92434 0.95582 0.95842 0.92698 0.81723 0.82189 0.78610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.05 37.16 0.34 -2.16 15 2 C 0.13 2.42 3.01 -67.92 -0.20 2.22 15 3 H 0.09 1.64 8.08 -51.93 -0.42 1.22 15 4 C 0.02 0.48 4.45 -27.88 -0.12 0.35 15 5 C -0.53 -13.66 8.41 -34.44 -0.29 -13.95 15 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 15 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 8 N -0.89 -25.64 13.29 55.43 0.74 -24.90 15 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 15 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 13 N -0.44 -8.20 2.62 -111.45 -0.29 -8.49 15 14 C -0.06 -1.05 11.54 -16.56 -0.19 -1.24 15 15 C -0.05 -0.80 11.87 -17.81 -0.21 -1.01 15 16 N -0.51 -9.99 11.25 -14.66 -0.16 -10.15 15 17 C 0.19 3.54 11.65 -90.38 -1.05 2.48 15 18 H 0.08 1.49 6.95 -51.93 -0.36 1.13 15 19 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.06 0.96 7.95 -51.93 -0.41 0.55 15 21 H 0.03 0.66 8.08 -51.93 -0.42 0.24 15 22 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 24 H 0.17 2.27 8.06 -52.49 -0.42 1.85 15 25 H 0.16 2.24 8.06 -52.48 -0.42 1.82 15 26 H 0.20 3.34 8.06 -52.48 -0.42 2.92 15 LS Contribution 230.32 15.07 3.47 3.47 Total: -1.00 -29.61 230.32 -6.34 -35.95 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -3.23 Total: 0.40 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.83 Total: -11.76 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.28 Total: -43.55 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.61 -6.34 -35.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709999798.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.378 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds