Wall clock time and date at job start Mon Mar 30 2020 02:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 H 1.08001 * 120.00311 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99914 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99650 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47375 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46804 * 120.00085 * 9 7 5 12 12 H 1.48499 * 109.46983 * 239.99431 * 9 7 5 13 13 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 14 14 C 1.36885 * 126.39286 * 120.00096 * 13 2 1 15 15 C 1.34665 * 106.81493 * 179.97438 * 14 13 2 16 16 N 1.34129 * 108.02445 * 0.02562 * 15 14 13 17 17 C 1.30498 * 109.25189 * 359.97438 * 16 15 14 18 18 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 19 19 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 20 20 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 22 22 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 23 23 H 0.96998 * 120.00030 * 180.02562 * 8 7 5 24 24 H 1.07999 * 126.59054 * 359.73997 * 14 13 2 25 25 H 1.08008 * 125.98738 * 179.97438 * 15 14 13 26 26 H 1.08006 * 125.64605 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9931 -0.4016 3.7284 8 7 2.6763 -1.5187 3.8512 9 14 1.4994 0.5635 5.2496 10 1 0.7429 1.7750 4.8433 11 1 0.6456 -0.2855 6.1188 12 1 2.7177 0.9682 5.9959 13 7 2.0184 -0.6907 -1.1961 14 6 2.8085 -0.1554 -2.1774 15 6 3.0192 -1.1298 -3.0827 16 7 2.3748 -2.2299 -2.6660 17 6 1.7733 -1.9743 -1.5365 18 1 -0.3633 0.5138 0.8899 19 1 -0.3632 0.5138 -0.8901 20 1 -0.3633 -1.0276 0.0005 21 1 1.6054 -1.7198 1.2952 22 1 3.1263 -0.7995 1.2057 23 1 2.9235 -1.8416 4.7318 24 1 3.1868 0.8553 -2.2195 25 1 3.6039 -1.0408 -3.9865 26 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709999798.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:13 Heat of formation + Delta-G solvation = 28.807861 kcal Electronic energy + Delta-G solvation = -10487.877654 eV Core-core repulsion = 8566.512125 eV Total energy + Delta-G solvation = -1921.365528 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.87836 -37.23158 -34.62977 -31.79118 -30.11291 -28.92444 -25.80344 -23.46109 -22.11846 -20.94439 -18.70893 -17.65841 -16.62050 -15.97880 -15.55047 -14.89270 -14.63010 -14.37852 -14.21289 -13.75697 -13.09983 -12.86024 -12.78991 -12.33402 -12.11301 -11.69735 -11.38107 -10.87836 -10.62738 -10.37589 -9.34952 -8.24518 -6.36490 1.27557 1.41880 1.43288 1.55323 2.05244 2.28459 2.41641 3.11084 3.86055 3.91025 4.10806 4.22789 4.42031 4.61568 4.77628 4.89293 4.97267 5.24016 5.31622 5.36247 5.64292 5.71301 5.95398 6.05712 6.39985 6.78990 7.21132 7.34049 8.88014 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.078627 B = 0.010117 C = 0.009681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.027209 B = 2767.072888 C = 2891.563997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.137 3.863 3 H 0.100 0.900 4 C 0.028 3.972 5 C -0.532 4.532 6 H 0.076 0.924 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.967 3.033 10 H -0.254 1.254 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.446 5.446 14 C -0.062 4.062 15 C -0.056 4.056 16 N -0.534 5.534 17 C 0.168 3.832 18 H 0.082 0.918 19 H 0.066 0.934 20 H 0.054 0.946 21 H 0.002 0.998 22 H -0.015 1.015 23 H 0.264 0.736 24 H 0.198 0.802 25 H 0.191 0.809 26 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 5.263 -6.931 9.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.035 3.965 3 H 0.118 0.882 4 C -0.009 4.009 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.792 3.208 10 H -0.178 1.178 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.127 5.127 14 C -0.196 4.196 15 C -0.204 4.204 16 N -0.254 5.254 17 C -0.115 4.115 18 H 0.101 0.899 19 H 0.085 0.915 20 H 0.073 0.927 21 H 0.020 0.980 22 H 0.004 0.996 23 H 0.072 0.928 24 H 0.215 0.785 25 H 0.208 0.792 26 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.058 4.490 -7.084 8.927 hybrid contribution 0.165 0.702 1.432 1.603 sum -2.894 5.192 -5.652 8.202 Atomic orbital electron populations 1.21956 0.92099 1.02693 1.02891 1.21714 0.96408 0.96615 0.81742 0.88167 1.19252 0.94543 0.95470 0.91655 1.21498 1.35462 1.09092 0.90997 0.90550 1.25966 0.94845 0.95932 1.02895 1.70120 1.39711 1.22948 1.24597 0.85359 0.77957 0.78943 0.78564 1.17795 1.20716 1.20969 1.46100 1.36732 1.11266 1.18573 1.23287 1.02137 1.02498 0.91711 1.22714 1.05621 0.89432 1.02650 1.70231 1.13972 1.29427 1.11724 1.24977 1.04402 0.86480 0.95622 0.89944 0.91492 0.92703 0.97999 0.99643 0.92755 0.78497 0.79235 0.78056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.05 71.98 0.65 -3.81 15 2 C 0.14 5.10 3.01 45.00 0.14 5.24 15 3 H 0.10 3.50 8.08 -2.39 -0.02 3.48 15 4 C 0.03 1.39 4.45 29.85 0.13 1.52 15 5 C -0.53 -27.39 8.41 25.60 0.22 -27.17 15 6 H 0.08 3.62 7.06 -2.91 -0.02 3.60 15 7 C 0.00 0.10 5.46 84.66 0.46 0.57 15 8 N -0.93 -54.89 13.29 21.45 0.28 -54.60 15 9 Si 0.97 41.64 29.54 68.60 2.03 43.67 15 10 H -0.25 -10.16 7.11 99.48 0.71 -9.45 15 11 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 12 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 13 N -0.45 -16.13 2.62 -506.53 -1.33 -17.46 15 14 C -0.06 -1.96 11.54 83.08 0.96 -1.00 15 15 C -0.06 -1.83 11.87 83.52 0.99 -0.84 15 16 N -0.53 -20.40 11.25 -200.31 -2.25 -22.66 15 17 C 0.17 6.31 11.65 180.26 2.10 8.41 15 18 H 0.08 2.70 6.95 -2.39 -0.02 2.68 15 19 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 20 H 0.05 1.77 7.95 -2.39 -0.02 1.75 15 21 H 0.00 0.09 8.08 -2.39 -0.02 0.07 15 22 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 15 23 H 0.26 14.63 8.31 -92.71 -0.77 13.86 15 24 H 0.20 4.74 8.06 -2.91 -0.02 4.71 15 25 H 0.19 4.78 8.06 -2.91 -0.02 4.76 15 26 H 0.20 7.01 8.06 -2.91 -0.02 6.99 15 Total: -1.00 -62.98 230.32 5.53 -57.45 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.15 Total: 10.68 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 5.65 Total: -17.08 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -3.29 Total: -94.72 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -62.98 5.53 -57.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709999798.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.258 kcal (2) G-P(sol) polarization free energy of solvation -62.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds