Wall clock time and date at job start Mon Mar 30 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.50695 * 109.47145 * 265.30936 * 8 7 6 10 10 H 1.08005 * 119.99980 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00474 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00286 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99518 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47165 * 89.99996 * 13 11 9 15 15 H 1.48498 * 109.46929 * 209.99839 * 13 11 9 16 16 H 1.48500 * 109.47033 * 329.99786 * 13 11 9 17 17 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 18 18 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 19 19 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 20 20 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 21 21 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 22 22 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 23 23 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 24 24 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 25 25 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 26 26 H 0.96999 * 119.99966 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5860 -3.0047 -1.4160 10 1 1.7349 -2.3149 -2.2337 11 6 1.1452 -4.2868 -1.6673 12 7 0.9057 -4.6696 -2.9024 13 14 0.8883 -5.4799 -0.2531 14 1 -0.5059 -5.3644 0.2450 15 1 1.1320 -6.8667 -0.7250 16 1 1.8346 -5.1572 0.8449 17 1 -0.3633 0.0004 -1.0276 18 1 -0.3633 -0.8902 0.5135 19 1 -0.3633 0.8898 0.5142 20 1 5.0836 1.7155 1.0262 21 1 5.6089 0.9983 -0.5158 22 1 4.5560 2.4334 -0.5147 23 1 4.4892 -1.3485 -0.0129 24 1 2.6329 -3.2001 0.4332 25 1 0.9471 -2.6503 0.5891 26 1 0.5960 -5.5717 -3.0791 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953051984.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:11 Heat of formation + Delta-G solvation = 67.631690 kcal Electronic energy + Delta-G solvation = -10430.481674 eV Core-core repulsion = 8510.799673 eV Total energy + Delta-G solvation = -1919.682000 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.48799 -33.92945 -32.69105 -30.79534 -29.16693 -27.32233 -24.70083 -22.14068 -19.87501 -18.68260 -16.68292 -15.95278 -14.94946 -14.12847 -13.65693 -13.17413 -12.99953 -12.63800 -12.22485 -11.96809 -11.61238 -11.45834 -11.30596 -10.63930 -10.35950 -10.01797 -9.63790 -9.24993 -8.51929 -8.49449 -7.38426 -5.98631 -3.95707 2.53429 3.10430 3.34035 3.41621 3.45013 3.61413 4.49010 4.93924 5.33472 5.35354 5.49688 5.55572 5.59083 5.91541 6.26770 6.39114 6.49008 6.64558 6.82675 7.12814 7.38690 7.52864 7.70404 7.83398 8.42036 8.63523 9.08739 9.63165 11.14905 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056466 B = 0.011749 C = 0.011112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.753806 B = 2382.544844 C = 2519.176130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.076 3.924 3 N -0.316 5.316 4 N -0.393 5.393 5 C 0.112 3.888 6 C 0.030 3.970 7 C -0.176 4.176 8 C 0.053 3.947 9 C -0.505 4.505 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.905 5.905 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.265 1.265 17 H 0.076 0.924 18 H 0.078 0.922 19 H 0.059 0.941 20 H 0.064 0.936 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.166 0.834 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 7.662 7.035 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.090 4.090 3 N -0.140 5.140 4 N -0.177 5.177 5 C -0.030 4.030 6 C -0.113 4.113 7 C -0.187 4.187 8 C 0.014 3.986 9 C -0.544 4.544 10 H 0.088 0.912 11 C -0.135 4.135 12 N -0.544 5.544 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 H 0.095 0.905 18 H 0.096 0.904 19 H 0.078 0.922 20 H 0.082 0.918 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.183 0.817 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.772 8.862 6.931 12.221 hybrid contribution 0.057 -1.608 0.483 1.679 sum 4.829 7.254 7.414 11.442 Atomic orbital electron populations 1.20075 0.87131 1.02073 1.02996 1.22218 0.96768 0.90533 0.99447 1.77083 0.86579 1.23114 1.27242 1.48122 1.04981 1.04720 1.59903 1.21620 0.84328 0.94824 1.02263 1.22198 0.99560 0.84138 1.05356 1.20382 0.91069 0.97688 1.09558 1.18090 0.95678 0.86925 0.97858 1.21051 1.44010 0.97841 0.91453 0.91160 1.25011 0.95067 0.98020 0.95368 1.69911 1.46706 1.18839 1.18979 0.86824 0.79100 0.80442 0.83238 1.20191 1.21476 1.18975 0.90517 0.90362 0.92245 0.91775 0.90137 0.90130 0.81697 0.96062 0.96086 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.26 36.00 0.37 -0.79 15 2 C 0.08 1.62 7.22 -82.40 -0.59 1.03 15 3 N -0.32 -6.51 12.57 33.67 0.42 -6.09 15 4 N -0.39 -7.14 4.01 -68.16 -0.27 -7.42 15 5 C 0.11 1.35 11.47 59.85 0.69 2.03 15 6 C 0.03 0.59 11.40 -17.22 -0.20 0.40 15 7 C -0.18 -3.95 5.29 -105.05 -0.56 -4.51 15 8 C 0.05 1.29 4.29 -29.04 -0.12 1.17 15 9 C -0.51 -14.53 9.65 -34.44 -0.33 -14.86 15 10 H 0.07 2.24 7.98 -52.48 -0.42 1.82 15 11 C 0.07 1.92 5.47 -17.82 -0.10 1.82 15 12 N -0.90 -27.98 13.96 55.43 0.77 -27.21 15 13 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 15 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 15 H -0.29 -7.04 7.11 56.52 0.40 -6.63 15 16 H -0.27 -6.22 6.54 56.52 0.37 -5.85 15 17 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 18 H 0.08 1.39 7.37 -51.93 -0.38 1.01 15 19 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.17 2.73 8.06 -52.49 -0.42 2.31 15 24 H 0.02 0.51 7.20 -51.93 -0.37 0.14 15 25 H 0.02 0.50 6.84 -51.93 -0.36 0.15 15 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 LS Contribution 230.29 15.07 3.47 3.47 Total: -1.00 -33.29 230.29 -4.35 -37.65 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -3.23 Total: -3.50 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -0.85 Total: -13.71 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.92 Total: -40.72 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -33.29 -4.35 -37.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953051984.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.278 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds