Wall clock time and date at job start Mon Mar 30 2020 01:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34751 * 124.79217 * 2 1 4 4 C 1.40066 * 124.80021 * 359.71636 * 3 2 1 5 5 H 1.07999 * 119.99883 * 350.66790 * 4 3 2 6 6 C 1.40310 * 120.00140 * 170.67241 * 4 3 2 7 7 N 1.30683 * 119.99936 * 351.41319 * 6 4 3 8 8 Si 1.86805 * 119.99823 * 171.41185 * 6 4 3 9 9 H 1.48494 * 109.46916 * 94.77698 * 8 6 4 10 10 H 1.48500 * 109.46864 * 214.77708 * 8 6 4 11 11 H 1.48498 * 109.46989 * 334.77753 * 8 6 4 12 12 C 1.51133 * 110.40393 * 179.73347 * 3 2 1 13 13 C 1.54517 * 104.95078 * 16.76032 * 12 3 2 14 14 C 1.51124 * 124.79956 * 179.69527 * 2 1 3 15 15 C 1.52996 * 110.34153 * 282.37657 * 14 2 1 16 16 C 1.53005 * 110.33936 * 44.63446 * 14 2 1 17 17 H 1.08999 * 109.47432 * 0.02718 * 1 2 3 18 18 H 1.09004 * 109.46695 * 120.02372 * 1 2 3 19 19 H 1.09000 * 109.47232 * 240.02326 * 1 2 3 20 20 H 0.97002 * 119.99745 * 179.97438 * 7 6 4 21 21 H 1.08995 * 110.33965 * 135.63178 * 12 3 2 22 22 H 1.08999 * 110.34245 * 257.78809 * 12 3 2 23 23 H 1.09002 * 110.92885 * 92.74499 * 13 12 3 24 24 H 1.09000 * 110.92528 * 216.36206 * 13 12 3 25 25 H 1.09004 * 109.47234 * 61.45631 * 15 14 2 26 26 H 1.09009 * 109.46913 * 181.44847 * 15 14 2 27 27 H 1.09000 * 109.47320 * 301.45001 * 15 14 2 28 28 H 1.09004 * 109.47059 * 58.55080 * 16 14 2 29 29 H 1.09008 * 109.46754 * 178.54845 * 16 14 2 30 30 H 1.08995 * 109.47344 * 298.54505 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.1066 0.0000 4 6 1.7875 2.4194 -0.0057 5 1 0.7348 2.6032 -0.1622 6 6 2.6658 3.4956 0.1918 7 7 3.9036 3.2721 0.5466 8 14 2.0659 5.2477 -0.0526 9 1 1.6386 5.8111 1.2532 10 1 3.1657 6.0739 -0.6121 11 1 0.9166 5.2508 -0.9930 12 6 3.7398 0.7311 0.0066 13 6 3.7724 -0.7537 -0.4198 14 6 2.3695 -1.2409 0.0066 15 6 2.4205 -1.8457 1.4110 16 6 1.8347 -2.2656 -0.9959 17 1 -0.3634 1.0276 -0.0005 18 1 -0.3633 -0.5142 -0.8898 19 1 -0.3634 -0.5135 0.8902 20 1 4.5109 4.0162 0.6828 21 1 4.2911 1.3427 -0.7076 22 1 4.1567 0.8490 1.0068 23 1 3.9058 -0.8464 -1.4977 24 1 4.5525 -1.2954 0.1151 25 1 1.4157 -2.1355 1.7186 26 1 3.0661 -2.7240 1.4052 27 1 2.8161 -1.1086 2.1099 28 1 1.8177 -1.8243 -1.9925 29 1 2.4812 -3.1433 -0.9982 30 1 0.8244 -2.5594 -0.7113 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001995195.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:54 Heat of formation + Delta-G solvation = -33.818592 kcal Electronic energy + Delta-G solvation = -11111.811260 eV Core-core repulsion = 9291.270389 eV Total energy + Delta-G solvation = -1820.540871 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.81466 -35.63313 -32.57847 -31.70751 -28.36997 -27.88733 -25.44553 -23.98722 -21.02264 -18.60406 -17.46861 -16.54377 -15.72024 -15.33430 -14.63974 -14.26895 -13.78616 -13.70791 -13.32745 -13.22417 -12.85874 -12.74094 -12.55312 -12.19327 -12.10015 -11.79623 -11.59521 -11.13255 -11.05764 -10.88558 -10.65884 -9.13197 -8.52163 -6.11652 1.27054 1.37416 1.50472 2.02452 2.24334 3.36587 4.13917 4.27563 4.35542 4.75836 4.84054 4.88605 4.92279 4.97900 5.06145 5.15464 5.16545 5.20877 5.26482 5.30745 5.39657 5.48439 5.61741 5.65291 5.83978 5.86574 6.20937 6.53595 6.69791 7.27029 7.37285 8.44249 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.059777 B = 0.013610 C = 0.012108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.297322 B = 2056.868750 C = 2311.941681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.389 4.389 3 C 0.039 3.961 4 C -0.488 4.488 5 H 0.065 0.935 6 C 0.030 3.970 7 N -0.840 5.840 8 Si 0.977 3.023 9 H -0.266 1.266 10 H -0.267 1.267 11 H -0.263 1.263 12 C -0.045 4.045 13 C -0.117 4.117 14 C -0.003 4.003 15 C -0.121 4.121 16 C -0.121 4.121 17 H 0.029 0.971 18 H 0.035 0.965 19 H 0.031 0.969 20 H 0.283 0.717 21 H 0.035 0.965 22 H 0.040 0.960 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.027 0.973 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.847 -3.979 -0.904 4.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.393 4.393 3 C 0.037 3.963 4 C -0.519 4.519 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.468 5.468 8 Si 0.798 3.202 9 H -0.190 1.190 10 H -0.192 1.192 11 H -0.187 1.187 12 C -0.083 4.083 13 C -0.155 4.155 14 C -0.003 4.003 15 C -0.178 4.178 16 C -0.178 4.178 17 H 0.048 0.952 18 H 0.054 0.946 19 H 0.050 0.950 20 H 0.093 0.907 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.610 -3.869 -0.844 4.007 hybrid contribution -0.073 1.065 0.040 1.068 sum -0.683 -2.805 -0.804 2.996 Atomic orbital electron populations 1.19695 0.93305 0.98631 0.98134 1.21517 0.93642 0.93116 1.31019 1.19183 0.93418 0.92915 0.90806 1.19387 0.95246 0.91885 1.45385 0.91678 1.26792 0.94469 1.05323 0.91683 1.69818 1.06161 1.35139 1.35696 0.85271 0.78962 0.76609 0.79314 1.19047 1.19155 1.18709 1.20726 0.95417 0.93499 0.98625 1.22562 0.97114 0.96183 0.99607 1.19652 0.92845 0.93606 0.94206 1.21701 1.00574 0.98992 0.96525 1.21700 1.00273 0.97748 0.98103 0.95233 0.94646 0.94996 0.90653 0.94621 0.94196 0.92558 0.91594 0.93358 0.92210 0.95343 0.94227 0.92366 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.82 9.74 71.24 0.69 -1.13 16 2 C -0.39 -19.00 5.16 -17.11 -0.09 -19.09 16 3 C 0.04 2.10 5.83 -20.08 -0.12 1.98 16 4 C -0.49 -27.43 8.89 23.22 0.21 -27.23 16 5 H 0.07 3.63 6.47 -2.91 -0.02 3.61 16 6 C 0.03 1.58 5.46 85.37 0.47 2.05 16 7 N -0.84 -44.96 10.66 21.89 0.23 -44.72 16 8 Si 0.98 40.20 29.57 68.60 2.03 42.23 16 9 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 10 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 12 C -0.05 -2.31 4.82 30.50 0.15 -2.16 16 13 C -0.12 -4.93 6.17 31.62 0.20 -4.74 16 14 C 0.00 -0.13 0.87 -52.28 -0.05 -0.17 16 15 C -0.12 -4.51 8.49 71.98 0.61 -3.90 16 16 C -0.12 -4.22 8.12 71.98 0.58 -3.63 16 17 H 0.03 1.35 6.39 -2.39 -0.02 1.34 16 18 H 0.03 1.43 7.90 -2.39 -0.02 1.41 16 19 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 20 H 0.28 13.79 8.29 -92.71 -0.77 13.02 16 21 H 0.04 1.91 7.38 -2.39 -0.02 1.90 16 22 H 0.04 2.15 7.85 -2.39 -0.02 2.13 16 23 H 0.06 2.27 7.90 -2.39 -0.02 2.25 16 24 H 0.07 2.47 7.90 -2.39 -0.02 2.45 16 25 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.05 1.64 7.81 -2.39 -0.02 1.62 16 Total: -1.00 -57.30 241.84 6.00 -51.29 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.09 Total: 9.21 kcal Atomic # 6 Polarization: -60.67 SS G_CDS: 2.65 Total: -58.01 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.23 Total: -44.72 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -57.30 6.00 -51.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001995195.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.473 kcal (2) G-P(sol) polarization free energy of solvation -57.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds