Wall clock time and date at job start Mon Mar 30 2020 01:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47342 * 239.72861 * 3 2 1 5 5 H 1.48505 * 109.47170 * 359.72425 * 3 2 1 6 6 H 1.48499 * 109.47251 * 119.72594 * 3 2 1 7 7 C 1.37878 * 119.99728 * 179.72727 * 2 1 3 8 8 H 1.08001 * 119.99978 * 175.42766 * 7 2 1 9 9 C 1.50700 * 120.00248 * 355.42687 * 7 2 1 10 10 H 1.09002 * 109.47023 * 335.37306 * 9 7 2 11 11 C 1.52996 * 109.47039 * 215.38070 * 9 7 2 12 12 C 1.53004 * 117.50335 * 123.76336 * 11 9 7 13 13 C 1.53001 * 117.50424 * 55.13708 * 11 9 7 14 14 C 1.52997 * 109.47205 * 95.37497 * 9 7 2 15 15 C 1.53774 * 113.61670 * 279.13751 * 14 9 7 16 16 C 1.53956 * 87.02135 * 220.04796 * 15 14 9 17 17 C 1.53780 * 87.11023 * 25.36419 * 16 15 14 18 18 H 0.97005 * 119.99524 * 185.09422 * 1 2 3 19 19 H 1.09007 * 115.54897 * 269.46627 * 11 9 7 20 20 H 1.09002 * 117.49412 * 0.02562 * 12 11 9 21 21 H 1.08995 * 117.50191 * 145.01411 * 12 11 9 22 22 H 1.08996 * 117.50076 * 214.97692 * 13 11 9 23 23 H 1.09000 * 117.49757 * 359.97438 * 13 11 9 24 24 H 1.08997 * 112.84793 * 50.33744 * 14 9 7 25 25 H 1.08997 * 113.61571 * 334.56765 * 15 14 9 26 26 H 1.08999 * 113.61666 * 105.46734 * 15 14 9 27 27 H 1.09004 * 113.53884 * 270.81291 * 16 15 14 28 28 H 1.09001 * 113.66714 * 139.93433 * 16 15 14 29 29 H 1.08996 * 113.61528 * 220.09351 * 17 16 15 30 30 H 1.08996 * 113.69388 * 89.20011 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1079 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0067 6 1 3.0979 1.6993 1.2158 7 6 2.0045 -1.1941 0.0057 8 1 3.0820 -1.1960 -0.0689 9 6 1.2546 -2.4966 0.1159 10 1 0.2957 -2.3235 0.6043 11 6 2.0754 -3.4893 0.9415 12 6 1.4120 -4.0979 2.1787 13 6 2.5163 -3.0511 2.3396 14 6 1.0185 -3.0691 -1.2831 15 6 -0.1772 -2.4361 -2.0140 16 6 -0.5115 -3.8501 -2.5232 17 6 0.2242 -4.3860 -1.2837 18 1 -0.4850 -0.8368 0.0746 19 1 2.7581 -4.1217 0.3737 20 1 0.3906 -3.7913 2.4042 21 1 1.6580 -5.1308 2.4249 22 1 3.4886 -3.3954 2.6917 23 1 2.2219 -2.0553 2.6710 24 1 1.9272 -3.1071 -1.8838 25 1 -0.9308 -2.0242 -1.3430 26 1 0.1113 -1.7433 -2.8045 27 1 -0.0218 -4.1010 -3.4642 28 1 -1.5786 -4.0725 -2.5277 29 1 0.8364 -5.2650 -1.4855 30 1 -0.4183 -4.5088 -0.4120 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017753383.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:30 Heat of formation + Delta-G solvation = 25.099159 kcal Electronic energy + Delta-G solvation = -11121.842564 eV Core-core repulsion = 9303.856558 eV Total energy + Delta-G solvation = -1817.986006 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.40523 -35.96313 -32.76927 -28.48145 -24.72683 -24.11480 -22.12386 -21.47052 -19.39426 -18.49526 -16.56717 -14.96850 -14.55268 -13.78555 -13.48114 -13.24656 -12.72834 -11.61498 -11.50638 -11.26231 -10.78161 -10.74790 -10.68040 -10.14914 -9.94020 -9.82073 -9.55605 -9.44662 -9.15957 -8.85581 -8.30019 -8.02559 -6.24057 -3.92250 3.47860 3.48926 3.67610 4.56635 4.82963 5.39703 5.45618 5.57959 5.63590 5.72350 5.91482 5.97267 6.05936 6.26942 6.29488 6.46877 6.51159 6.56584 6.66038 6.80363 6.91716 7.03333 7.07982 7.13981 7.31157 7.54677 7.70051 8.37157 8.55850 9.00557 9.77186 11.14054 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.018665 C = 0.013093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.793735 B = 1499.791871 C = 2137.995396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.021 3.979 3 Si 1.062 2.938 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.290 1.290 7 C -0.579 4.579 8 H 0.046 0.954 9 C 0.064 3.936 10 H 0.037 0.963 11 C -0.114 4.114 12 C -0.202 4.202 13 C -0.172 4.172 14 C -0.086 4.086 15 C -0.117 4.117 16 C -0.151 4.151 17 C -0.142 4.142 18 H 0.270 0.730 19 H 0.079 0.921 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 -5.853 -0.499 6.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.891 3.109 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.618 4.618 8 H 0.064 0.936 9 C 0.045 3.955 10 H 0.055 0.945 11 C -0.132 4.132 12 C -0.239 4.239 13 C -0.209 4.209 14 C -0.105 4.105 15 C -0.155 4.155 16 C -0.188 4.188 17 C -0.179 4.179 18 H 0.083 0.917 19 H 0.097 0.903 20 H 0.101 0.899 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.113 0.887 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.014 -4.198 -0.563 4.355 hybrid contribution 0.317 -1.720 0.061 1.750 sum 1.331 -5.918 -0.502 6.087 Atomic orbital electron populations 1.70839 1.06748 1.31088 1.46704 1.25684 0.96574 1.02179 0.93822 0.83639 0.74961 0.75862 0.76402 1.21667 1.21005 1.21636 1.21828 0.94286 0.91311 1.54352 0.93582 1.18576 0.95101 0.92321 0.89490 0.94474 1.22415 1.01272 1.00262 0.89282 1.22966 0.97784 0.96916 1.06263 1.22711 0.96951 0.99042 1.02180 1.22633 0.95616 0.92699 0.99527 1.22788 0.99078 0.94097 0.99533 1.22936 0.99038 0.99204 0.97641 1.22970 0.99468 0.98142 0.97329 0.91666 0.90256 0.89900 0.90730 0.90822 0.88693 0.91327 0.90133 0.92840 0.91482 0.92903 0.93291 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 13.41 55.43 0.74 -26.09 16 2 C 0.02 0.59 5.45 -17.82 -0.10 0.50 16 3 Si 1.06 25.19 29.91 -169.99 -5.08 20.11 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.58 -15.81 7.71 -34.44 -0.27 -16.08 16 8 H 0.05 1.28 7.82 -52.49 -0.41 0.87 16 9 C 0.06 1.55 1.67 -91.78 -0.15 1.40 16 10 H 0.04 0.99 5.95 -51.93 -0.31 0.68 16 11 C -0.11 -2.44 4.76 -90.62 -0.43 -2.87 16 12 C -0.20 -3.83 10.18 -26.73 -0.27 -4.11 16 13 C -0.17 -3.49 9.78 -26.73 -0.26 -3.75 16 14 C -0.09 -1.89 3.05 -89.81 -0.27 -2.17 16 15 C -0.12 -2.55 7.20 -25.83 -0.19 -2.73 16 16 C -0.15 -2.70 8.09 -25.83 -0.21 -2.91 16 17 C -0.14 -2.65 7.16 -25.92 -0.19 -2.83 16 18 H 0.27 7.82 4.59 -40.82 -0.19 7.63 16 19 H 0.08 1.63 8.08 -51.92 -0.42 1.22 16 20 H 0.08 1.61 8.03 -51.93 -0.42 1.19 16 21 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.09 2.12 8.02 -51.93 -0.42 1.70 16 24 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 25 H 0.08 1.89 6.32 -51.93 -0.33 1.57 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 LS Contribution 243.59 15.07 3.67 3.67 Total: -1.00 -28.14 243.59 -7.67 -35.81 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.66 Total: 2.06 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: -2.34 Total: -35.55 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.14 -7.67 -35.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017753383.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.905 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds