Wall clock time and date at job start Mon Mar 30 2020 02:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48502 * 109.47338 * 239.99979 * 3 2 1 5 5 H 1.48496 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47340 * 120.00111 * 3 2 1 7 7 C 1.37874 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00369 * 0.02562 * 7 2 1 10 10 H 1.09002 * 112.36794 * 50.55058 * 9 7 2 11 11 C 1.52889 * 113.04781 * 281.12009 * 9 7 2 12 12 C 1.50562 * 82.44988 * 244.54243 * 11 9 7 13 13 O 1.21290 * 131.84168 * 180.02562 * 12 11 9 14 14 N 1.34596 * 96.31206 * 0.02562 * 12 11 9 15 15 C 1.46496 * 134.66908 * 180.02562 * 14 12 11 16 16 C 1.53004 * 117.49845 * 8.74420 * 15 14 12 17 17 C 1.53001 * 117.49914 * 300.08398 * 15 14 12 18 18 H 0.96995 * 119.99886 * 359.97438 * 1 2 3 19 19 H 1.09002 * 114.37353 * 357.94078 * 11 9 7 20 20 H 1.08999 * 114.37437 * 131.14284 * 11 9 7 21 21 H 1.09004 * 115.55076 * 154.41277 * 15 14 12 22 22 H 1.08998 * 117.49888 * 0.02562 * 16 15 14 23 23 H 1.09002 * 117.49630 * 145.02130 * 16 15 14 24 24 H 1.09004 * 117.50082 * 214.97678 * 17 15 14 25 25 H 1.08994 * 117.49898 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.4893 -2.5384 -0.7781 11 6 0.7163 -2.8816 1.3809 12 6 1.6775 -4.0287 1.2163 13 8 1.9514 -4.9646 1.9376 14 7 2.1312 -3.6685 0.0014 15 6 3.1084 -4.2226 -0.9389 16 6 3.6794 -5.6080 -0.6298 17 6 4.5532 -4.3632 -0.4553 18 1 -0.4850 0.8400 0.0004 19 1 0.9807 -2.1833 2.1750 20 1 -0.3341 -3.1727 1.3915 21 1 2.9511 -3.9653 -1.9864 22 1 3.3277 -6.1073 0.2730 23 1 3.8982 -6.2620 -1.4739 24 1 5.3464 -4.1989 -1.1847 25 1 4.7766 -4.0431 0.5624 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018329747.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:02 Heat of formation + Delta-G solvation = 18.486720 kcal Electronic energy + Delta-G solvation = -10745.504790 eV Core-core repulsion = 8725.973042 eV Total energy + Delta-G solvation = -2019.531748 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.82748 -36.19725 -35.40265 -32.46238 -27.86820 -26.09225 -22.15186 -21.94276 -21.49607 -17.53474 -16.90487 -15.98717 -15.44108 -14.64526 -14.55359 -13.98959 -12.83841 -12.36884 -11.98112 -11.53151 -11.20374 -11.08456 -11.04484 -10.75902 -10.38041 -10.26723 -9.84380 -9.51035 -8.95452 -8.59265 -7.60476 -6.23213 -4.31715 3.22774 3.27920 3.30232 3.37088 3.86732 4.29171 4.37132 4.99999 5.10318 5.29179 5.42629 5.54655 5.97390 6.07278 6.32622 6.36425 6.46718 6.53129 6.84178 7.22040 7.56555 7.70914 7.75471 8.05858 8.71789 9.20572 9.38050 10.83596 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.050170 B = 0.013791 C = 0.011871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.968563 B = 2029.879544 C = 2358.194874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.263 3.737 10 H 0.057 0.943 11 C -0.158 4.158 12 C 0.510 3.490 13 O -0.561 6.561 14 N -0.603 5.603 15 C 0.115 3.885 16 C -0.194 4.194 17 C -0.196 4.196 18 H 0.267 0.733 19 H 0.109 0.891 20 H 0.095 0.905 21 H 0.125 0.875 22 H 0.103 0.897 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -3.441 -2.276 5.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.163 3.837 10 H 0.074 0.926 11 C -0.199 4.199 12 C 0.299 3.701 13 O -0.441 6.441 14 N -0.336 5.336 15 C 0.011 3.989 16 C -0.232 4.232 17 C -0.235 4.235 18 H 0.077 0.923 19 H 0.127 0.873 20 H 0.113 0.887 21 H 0.143 0.857 22 H 0.121 0.879 23 H 0.114 0.886 24 H 0.113 0.887 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.465 -3.868 -2.074 5.592 hybrid contribution 0.558 0.977 -0.098 1.129 sum 4.023 -2.891 -2.171 5.409 Atomic orbital electron populations 1.69922 1.05964 1.27571 1.48615 1.24943 0.94909 0.99321 0.94229 0.86511 0.79540 0.82277 0.78877 1.20081 1.21040 1.20017 1.21109 0.93514 0.89525 1.52702 0.91704 1.19860 0.87202 0.83479 0.93160 0.92565 1.23365 0.98231 0.95597 1.02669 1.22628 0.81913 0.85203 0.80375 1.90551 1.66385 1.34395 1.52753 1.50041 1.38570 1.27770 1.17195 1.21192 0.87911 0.96543 0.93279 1.23336 1.04546 0.91289 1.04004 1.23349 0.94963 1.02170 1.02991 0.92316 0.87267 0.88680 0.85724 0.87893 0.88634 0.88680 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.58 13.29 55.43 0.74 -22.84 15 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 15 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.53 -13.73 8.93 -34.44 -0.31 -14.04 15 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 15 9 C 0.26 6.31 3.96 -81.50 -0.32 5.99 15 10 H 0.06 1.41 8.14 -51.93 -0.42 0.99 15 11 C -0.16 -3.54 8.14 -28.01 -0.23 -3.77 15 12 C 0.51 11.89 8.97 -23.41 -0.21 11.68 15 13 O -0.56 -14.07 16.93 5.55 0.09 -13.98 15 14 N -0.60 -13.40 3.51 -185.98 -0.65 -14.05 15 15 C 0.11 2.15 7.32 -67.93 -0.50 1.65 15 16 C -0.19 -3.21 10.20 -26.69 -0.27 -3.48 15 17 C -0.20 -3.32 10.46 -26.69 -0.28 -3.59 15 18 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 19 H 0.11 2.49 8.00 -51.93 -0.42 2.08 15 20 H 0.09 1.95 8.14 -51.93 -0.42 1.53 15 21 H 0.13 2.10 8.14 -51.93 -0.42 1.68 15 22 H 0.10 1.95 6.98 -51.93 -0.36 1.59 15 23 H 0.10 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.09 1.73 8.14 -51.93 -0.42 1.31 15 LS Contribution 227.97 15.07 3.44 3.44 Total: -1.00 -28.33 227.97 -6.48 -34.82 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -2.86 Total: 1.31 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.08 Total: -36.89 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.33 -6.48 -34.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018329747.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.302 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds