Wall clock time and date at job start Mon Mar 30 2020 02:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00051 * 2 1 4 4 H 1.48502 * 109.46958 * 239.99438 * 3 2 1 5 5 H 1.48509 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47769 * 119.99376 * 3 2 1 7 7 C 1.37879 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99542 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99845 * 0.02562 * 7 2 1 10 10 H 1.08997 * 112.99024 * 307.95199 * 9 7 2 11 11 C 1.53737 * 113.70534 * 79.50713 * 9 7 2 12 12 C 1.51508 * 86.60696 * 114.39796 * 11 9 7 13 13 O 1.21286 * 134.17647 * 180.02562 * 12 11 9 14 14 N 1.35834 * 91.65293 * 359.97438 * 12 11 9 15 15 C 1.46500 * 132.38415 * 180.02562 * 14 12 11 16 16 C 1.53007 * 117.49560 * 8.56452 * 15 14 12 17 17 C 1.53003 * 117.49448 * 299.94453 * 15 14 12 18 18 H 0.96997 * 120.00068 * 0.02562 * 1 2 3 19 19 H 1.09004 * 113.68660 * 228.82331 * 11 9 7 20 20 H 1.08996 * 113.68917 * 359.96490 * 11 9 7 21 21 H 1.08996 * 115.55461 * 154.27516 * 15 14 12 22 22 H 1.08999 * 117.49571 * 359.97438 * 16 15 14 23 23 H 1.08991 * 117.49696 * 145.02224 * 16 15 14 24 24 H 1.09007 * 117.49338 * 214.97330 * 17 15 14 25 25 H 1.08992 * 117.50498 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5034 -2.5591 0.7915 11 6 0.7205 -2.9065 -1.3837 12 6 1.6778 -4.0782 -1.3062 13 8 1.9441 -5.0024 -2.0451 14 7 2.1215 -3.6855 -0.0839 15 6 3.1183 -4.2460 0.8318 16 6 3.9825 -5.3984 0.3159 17 6 2.8842 -5.6676 1.3466 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3298 -3.1982 -1.3817 20 1 0.9627 -2.1944 -2.1725 21 1 3.5833 -3.5340 1.5137 22 1 3.8090 -5.7398 -0.7046 23 1 5.0162 -5.4446 0.6582 24 1 3.1956 -5.8910 2.3671 25 1 1.9884 -6.1858 1.0044 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018329749.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:04 Heat of formation + Delta-G solvation = -3.546607 kcal Electronic energy + Delta-G solvation = -10703.496722 eV Core-core repulsion = 8683.009537 eV Total energy + Delta-G solvation = -2020.487185 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.32365 -37.80351 -37.13084 -34.44151 -29.39250 -28.11414 -24.05472 -23.27583 -23.05992 -19.40715 -18.51645 -17.97673 -17.14179 -16.60029 -16.04603 -15.66950 -14.30860 -14.26297 -13.93382 -13.27658 -12.92354 -12.84746 -12.49307 -12.46189 -12.14736 -12.07444 -11.33192 -11.30440 -10.78276 -10.55902 -9.33177 -8.21720 -6.37247 1.47182 1.47810 1.52472 1.56447 2.20606 2.45386 2.93372 3.08184 3.39304 3.85093 4.02664 4.10294 4.43552 4.61731 4.69099 4.76630 4.94738 5.01070 5.19314 5.28166 5.64500 5.80164 5.91748 6.10827 6.69424 7.30967 7.48395 8.84717 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.053271 B = 0.012895 C = 0.011584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.484057 B = 2170.819811 C = 2416.597825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.031 3.969 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.275 3.725 10 H 0.048 0.952 11 C -0.159 4.159 12 C 0.512 3.488 13 O -0.569 6.569 14 N -0.601 5.601 15 C 0.062 3.938 16 C -0.183 4.183 17 C -0.179 4.179 18 H 0.271 0.729 19 H 0.103 0.897 20 H 0.097 0.903 21 H 0.136 0.864 22 H 0.076 0.924 23 H 0.128 0.872 24 H 0.131 0.869 25 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -3.465 3.092 6.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.175 3.825 10 H 0.066 0.934 11 C -0.200 4.200 12 C 0.301 3.699 13 O -0.450 6.450 14 N -0.333 5.333 15 C -0.042 4.042 16 C -0.220 4.220 17 C -0.217 4.217 18 H 0.080 0.920 19 H 0.121 0.879 20 H 0.115 0.885 21 H 0.154 0.846 22 H 0.095 0.905 23 H 0.146 0.854 24 H 0.149 0.851 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.022 -3.878 2.863 6.278 hybrid contribution 0.228 0.795 -0.087 0.831 sum 4.249 -3.083 2.776 5.939 Atomic orbital electron populations 1.70004 1.07114 1.28541 1.48887 1.25634 0.95662 1.02220 0.93639 0.85535 0.78355 0.78445 0.78883 1.19915 1.20530 1.19443 1.21201 0.93375 0.90417 1.53306 0.92241 1.20030 0.86638 0.82841 0.93004 0.93388 1.23848 0.99315 0.94873 1.01931 1.22829 0.81952 0.84748 0.80366 1.90563 1.67707 1.35569 1.51184 1.51126 1.37844 1.27349 1.17022 1.21825 0.94741 0.90557 0.97042 1.23301 0.97806 1.01555 0.99374 1.23414 0.99885 0.98186 1.00240 0.92035 0.87876 0.88496 0.84639 0.90516 0.85359 0.85129 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.90 13.29 21.45 0.28 -47.61 15 2 C 0.03 1.56 5.46 84.66 0.46 2.02 15 3 Si 0.96 40.29 29.54 68.60 2.03 42.32 15 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 5 H -0.28 -11.44 7.11 99.48 0.71 -10.74 15 6 H -0.27 -10.97 7.11 99.48 0.71 -10.27 15 7 C -0.55 -27.82 9.01 25.60 0.23 -27.59 15 8 H 0.06 3.05 7.81 -2.91 -0.02 3.03 15 9 C 0.28 13.13 4.24 44.22 0.19 13.32 15 10 H 0.05 2.41 8.14 -2.39 -0.02 2.39 15 11 C -0.16 -7.12 7.90 30.37 0.24 -6.88 15 12 C 0.51 23.65 9.29 87.64 0.81 24.46 15 13 O -0.57 -28.22 16.85 -3.05 -0.05 -28.27 15 14 N -0.60 -26.31 3.44 -792.97 -2.73 -29.04 15 15 C 0.06 2.23 7.26 45.00 0.33 2.56 15 16 C -0.18 -5.77 10.14 30.60 0.31 -5.46 15 17 C -0.18 -5.34 10.46 30.60 0.32 -5.02 15 18 H 0.27 13.53 8.31 -92.71 -0.77 12.76 15 19 H 0.10 4.24 8.14 -2.38 -0.02 4.22 15 20 H 0.10 4.46 8.00 -2.39 -0.02 4.44 15 21 H 0.14 4.57 8.14 -2.39 -0.02 4.55 15 22 H 0.08 2.88 6.85 -2.39 -0.02 2.86 15 23 H 0.13 3.16 8.14 -2.39 -0.02 3.14 15 24 H 0.13 2.97 8.14 -2.38 -0.02 2.95 15 25 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 Total: -1.00 -57.64 228.02 3.60 -54.04 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.18 Total: 11.17 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 2.89 Total: -2.60 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -2.44 Total: -76.65 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.05 Total: -28.27 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -57.64 3.60 -54.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018329749.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.494 kcal (2) G-P(sol) polarization free energy of solvation -57.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds