Wall clock time and date at job start Mon Mar 30 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00254 * 2 1 4 4 H 1.48496 * 109.46813 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.46931 * 299.99853 * 3 2 1 6 6 H 1.48505 * 109.46920 * 60.00227 * 3 2 1 7 7 C 1.37874 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 184.99767 * 10 9 7 12 12 C 1.52998 * 117.49473 * 128.74735 * 11 10 9 13 13 C 1.52999 * 117.49564 * 60.08975 * 11 10 9 14 14 C 1.52999 * 109.46991 * 65.00452 * 10 9 7 15 15 C 1.53005 * 117.49421 * 248.74300 * 14 10 9 16 16 C 1.53005 * 117.50089 * 180.09060 * 14 10 9 17 17 H 0.97001 * 119.99408 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.46894 * 59.99611 * 9 7 2 19 19 H 1.09001 * 109.46755 * 300.00236 * 9 7 2 20 20 H 1.08993 * 109.47194 * 304.99609 * 10 9 7 21 21 H 1.08996 * 115.55247 * 274.41876 * 11 10 9 22 22 H 1.08992 * 117.50074 * 0.02562 * 12 11 10 23 23 H 1.09001 * 117.49625 * 145.02619 * 12 11 10 24 24 H 1.09006 * 117.49693 * 214.97957 * 13 11 10 25 25 H 1.08998 * 117.50050 * 359.97172 * 13 11 10 26 26 H 1.08995 * 115.55503 * 34.40793 * 14 10 9 27 27 H 1.08999 * 117.50011 * 0.02562 * 15 14 10 28 28 H 1.09004 * 117.49761 * 145.01847 * 15 14 10 29 29 H 1.09000 * 117.50058 * 214.98050 * 16 14 10 30 30 H 1.08999 * 117.49282 * 359.96831 * 16 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4842 -4.9836 -0.1251 12 6 1.9378 -5.9592 -1.2129 13 6 0.6254 -5.1881 -1.3747 14 6 3.0398 -3.6537 1.3079 15 6 4.5269 -3.3025 1.2284 16 6 4.0944 -4.7453 1.5008 17 1 -0.4849 0.8401 0.0004 18 1 0.6246 -2.5570 -0.8897 19 1 0.6239 -2.5566 0.8903 20 1 2.9292 -3.5553 -0.8413 21 1 1.1199 -5.4072 0.8108 22 1 2.7785 -5.6598 -1.8387 23 1 1.8716 -7.0247 -0.9928 24 1 -0.3037 -5.7466 -1.2610 25 1 0.6021 -4.3811 -2.1070 26 1 2.4910 -3.3227 2.1896 27 1 4.9389 -3.0771 0.2448 28 1 4.9564 -2.7408 2.0580 29 1 4.2395 -5.1324 2.5093 30 1 4.2216 -5.4697 0.6964 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019461341.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:45 Heat of formation + Delta-G solvation = 27.025389 kcal Electronic energy + Delta-G solvation = -10779.797660 eV Core-core repulsion = 8961.895182 eV Total energy + Delta-G solvation = -1817.902478 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.15064 -35.52982 -32.98381 -30.12046 -25.56698 -22.34052 -21.77416 -21.39697 -20.66232 -18.78359 -16.22458 -15.21935 -14.78638 -14.23892 -13.68995 -13.36813 -12.30377 -11.63575 -11.51860 -11.11470 -10.98964 -10.92111 -10.87808 -10.50976 -10.19218 -9.98581 -9.78384 -9.48453 -9.19427 -8.82631 -8.67387 -8.27794 -5.92632 -3.92998 3.34315 3.42020 3.46251 4.39634 4.50222 4.54438 5.21512 5.41582 5.44210 5.52897 5.60357 5.69092 5.77646 6.01774 6.14029 6.14541 6.31603 6.42187 6.54930 6.60557 6.65086 6.70338 6.82485 7.15129 7.21228 7.78383 7.91357 8.08747 8.52636 9.14489 9.70155 11.18866 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.040737 B = 0.013232 C = 0.010678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.164702 B = 2115.614990 C = 2621.666216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.025 4.025 11 C -0.129 4.129 12 C -0.193 4.193 13 C -0.179 4.179 14 C -0.107 4.107 15 C -0.176 4.176 16 C -0.198 4.198 17 H 0.258 0.742 18 H 0.019 0.981 19 H 0.016 0.984 20 H 0.056 0.944 21 H 0.094 0.906 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -8.436 0.425 9.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.076 0.924 9 C -0.005 4.005 10 C -0.043 4.043 11 C -0.147 4.147 12 C -0.230 4.230 13 C -0.216 4.216 14 C -0.125 4.125 15 C -0.213 4.213 16 C -0.235 4.235 17 H 0.067 0.933 18 H 0.037 0.963 19 H 0.034 0.966 20 H 0.075 0.925 21 H 0.113 0.887 22 H 0.105 0.895 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.535 -8.318 0.423 9.483 hybrid contribution 0.416 0.999 0.037 1.083 sum 4.950 -7.319 0.461 8.848 Atomic orbital electron populations 1.69981 1.05985 1.26210 1.51604 1.25007 0.94767 0.99050 0.95741 0.86622 0.80226 0.84239 0.77450 1.19772 1.21191 1.21181 1.21327 0.93186 0.90855 1.49357 0.92420 1.19117 0.93398 0.90630 0.97343 1.20507 0.96601 0.93013 0.94180 1.22368 1.02089 0.97514 0.92729 1.22982 0.98690 0.96920 1.04419 1.22884 0.93855 1.02828 1.02073 1.22152 0.90269 1.00113 0.99949 1.22841 0.99158 0.97158 1.02139 1.22942 1.07060 0.92182 1.01333 0.93257 0.96309 0.96591 0.92515 0.88750 0.89486 0.89957 0.89717 0.88592 0.88373 0.89431 0.89801 0.90095 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.51 -14.28 8.61 -34.44 -0.30 -14.57 16 8 H 0.06 1.59 7.33 -52.49 -0.38 1.20 16 9 C 0.03 0.82 4.34 -27.88 -0.12 0.70 16 10 C -0.02 -0.51 2.11 -90.62 -0.19 -0.70 16 11 C -0.13 -2.30 4.81 -90.62 -0.44 -2.73 16 12 C -0.19 -2.95 10.18 -26.69 -0.27 -3.23 16 13 C -0.18 -3.02 9.68 -26.69 -0.26 -3.28 16 14 C -0.11 -2.05 4.49 -90.61 -0.41 -2.45 16 15 C -0.18 -3.09 9.89 -26.69 -0.26 -3.35 16 16 C -0.20 -3.14 9.88 -26.69 -0.26 -3.40 16 17 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 18 H 0.02 0.51 7.13 -51.93 -0.37 0.14 16 19 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 20 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 21 H 0.09 1.63 8.11 -51.93 -0.42 1.21 16 22 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.10 1.75 7.59 -51.93 -0.39 1.35 16 26 H 0.10 1.99 8.11 -51.93 -0.42 1.57 16 27 H 0.09 1.55 8.05 -51.93 -0.42 1.13 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 252.79 15.07 3.81 3.81 Total: -1.00 -29.23 252.79 -7.98 -37.21 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.90 Total: 0.08 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -2.61 Total: -31.54 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.23 -7.98 -37.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019461341.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.235 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds