Wall clock time and date at job start Mon Mar 30 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00254 * 2 1 4 4 H 1.48496 * 109.46813 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.46931 * 299.99853 * 3 2 1 6 6 H 1.48505 * 109.46920 * 60.00227 * 3 2 1 7 7 C 1.37874 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 184.99767 * 10 9 7 12 12 C 1.52998 * 117.49473 * 128.74735 * 11 10 9 13 13 C 1.52999 * 117.49564 * 60.08975 * 11 10 9 14 14 C 1.52999 * 109.46991 * 65.00452 * 10 9 7 15 15 C 1.53005 * 117.49421 * 248.74300 * 14 10 9 16 16 C 1.53005 * 117.50089 * 180.09060 * 14 10 9 17 17 H 0.97001 * 119.99408 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.46894 * 59.99611 * 9 7 2 19 19 H 1.09001 * 109.46755 * 300.00236 * 9 7 2 20 20 H 1.08993 * 109.47194 * 304.99609 * 10 9 7 21 21 H 1.08996 * 115.55247 * 274.41876 * 11 10 9 22 22 H 1.08992 * 117.50074 * 0.02562 * 12 11 10 23 23 H 1.09001 * 117.49625 * 145.02619 * 12 11 10 24 24 H 1.09006 * 117.49693 * 214.97957 * 13 11 10 25 25 H 1.08998 * 117.50050 * 359.97172 * 13 11 10 26 26 H 1.08995 * 115.55503 * 34.40793 * 14 10 9 27 27 H 1.08999 * 117.50011 * 0.02562 * 15 14 10 28 28 H 1.09004 * 117.49761 * 145.01847 * 15 14 10 29 29 H 1.09000 * 117.50058 * 214.98050 * 16 14 10 30 30 H 1.08999 * 117.49282 * 359.96831 * 16 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4842 -4.9836 -0.1251 12 6 1.9378 -5.9592 -1.2129 13 6 0.6254 -5.1881 -1.3747 14 6 3.0398 -3.6537 1.3079 15 6 4.5269 -3.3025 1.2284 16 6 4.0944 -4.7453 1.5008 17 1 -0.4849 0.8401 0.0004 18 1 0.6246 -2.5570 -0.8897 19 1 0.6239 -2.5566 0.8903 20 1 2.9292 -3.5553 -0.8413 21 1 1.1199 -5.4072 0.8108 22 1 2.7785 -5.6598 -1.8387 23 1 1.8716 -7.0247 -0.9928 24 1 -0.3037 -5.7466 -1.2610 25 1 0.6021 -4.3811 -2.1070 26 1 2.4910 -3.3227 2.1896 27 1 4.9389 -3.0771 0.2448 28 1 4.9564 -2.7408 2.0580 29 1 4.2395 -5.1324 2.5093 30 1 4.2216 -5.4697 0.6964 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019461341.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:45 Heat of formation + Delta-G solvation = 11.924413 kcal Electronic energy + Delta-G solvation = -10780.452488 eV Core-core repulsion = 8961.895182 eV Total energy + Delta-G solvation = -1818.557306 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.63593 -36.88664 -35.10708 -32.02205 -27.53298 -24.09765 -23.09751 -22.90498 -22.09360 -20.36225 -18.39573 -16.64440 -16.58913 -15.89345 -15.23407 -14.81766 -14.29779 -13.47780 -13.35864 -12.81885 -12.71430 -12.34212 -12.28592 -12.22004 -11.85874 -11.84952 -11.34513 -11.01504 -10.91656 -10.50736 -10.44590 -10.30764 -8.14646 -6.22715 1.38663 1.39256 1.52128 2.42837 3.06169 3.11791 3.19887 3.80567 4.07582 4.17867 4.25122 4.29874 4.39168 4.62646 4.82375 4.83921 4.88533 5.02738 5.12944 5.13749 5.28943 5.35263 5.39798 5.42710 5.49692 5.63994 5.85859 5.93098 6.34517 6.94195 7.45069 8.97555 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.040737 B = 0.013232 C = 0.010678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.164702 B = 2115.614990 C = 2621.666216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.039 3.961 10 C -0.013 4.013 11 C -0.148 4.148 12 C -0.160 4.160 13 C -0.192 4.192 14 C -0.137 4.137 15 C -0.183 4.183 16 C -0.159 4.159 17 H 0.260 0.740 18 H -0.010 1.010 19 H -0.015 1.015 20 H 0.048 0.952 21 H 0.101 0.899 22 H 0.090 0.910 23 H 0.113 0.887 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.365 -9.487 0.569 11.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.079 0.921 9 C 0.002 3.998 10 C -0.031 4.031 11 C -0.166 4.166 12 C -0.196 4.196 13 C -0.229 4.229 14 C -0.155 4.155 15 C -0.220 4.220 16 C -0.196 4.196 17 H 0.069 0.931 18 H 0.009 0.991 19 H 0.004 0.996 20 H 0.066 0.934 21 H 0.119 0.881 22 H 0.109 0.891 23 H 0.132 0.868 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.235 -9.380 0.565 11.277 hybrid contribution -0.145 1.314 -0.013 1.322 sum 6.090 -8.066 0.552 10.122 Atomic orbital electron populations 1.70117 1.07713 1.27271 1.52739 1.25918 0.95646 1.03031 0.95408 0.85522 0.79279 0.79462 0.77571 1.18569 1.20646 1.20662 1.21701 0.93509 0.92000 1.48695 0.92077 1.18974 0.93783 0.92626 0.94381 1.20223 0.95443 0.92547 0.94895 1.22281 1.03367 0.97209 0.93781 1.23051 0.97250 0.97841 1.01497 1.22915 0.95810 1.03131 1.01046 1.21982 0.91038 1.04175 0.98342 1.22926 0.97514 0.99161 1.02382 1.22992 1.02402 0.91137 1.03078 0.93110 0.99139 0.99650 0.93378 0.88085 0.89133 0.86833 0.88010 0.90902 0.90294 0.89798 0.89009 0.87800 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 3 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.52 -29.87 8.61 25.60 0.22 -29.65 16 8 H 0.06 3.39 7.33 -2.91 -0.02 3.36 16 9 C 0.04 2.11 4.34 29.85 0.13 2.24 16 10 C -0.01 -0.53 2.11 -10.79 -0.02 -0.55 16 11 C -0.15 -5.15 4.81 -10.79 -0.05 -5.20 16 12 C -0.16 -4.43 10.18 30.62 0.31 -4.11 16 13 C -0.19 -6.35 9.68 30.62 0.30 -6.05 16 14 C -0.14 -5.17 4.49 -10.79 -0.05 -5.22 16 15 C -0.18 -6.10 9.89 30.62 0.30 -5.80 16 16 C -0.16 -4.55 9.88 30.62 0.30 -4.25 16 17 H 0.26 15.22 8.31 -92.71 -0.77 14.44 16 18 H -0.01 -0.57 7.13 -2.39 -0.02 -0.58 16 19 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 20 H 0.05 2.05 7.66 -2.39 -0.02 2.03 16 21 H 0.10 3.36 8.11 -2.39 -0.02 3.34 16 22 H 0.09 2.47 8.05 -2.39 -0.02 2.45 16 23 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 25 H 0.07 2.73 7.59 -2.39 -0.02 2.71 16 26 H 0.08 3.25 8.11 -2.39 -0.02 3.23 16 27 H 0.08 2.85 8.05 -2.39 -0.02 2.83 16 28 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -63.64 252.79 5.30 -58.35 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.08 Total: 10.66 kcal Atomic # 6 Polarization: -60.24 SS G_CDS: 1.90 Total: -58.34 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.28 Total: -57.98 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -63.64 5.30 -58.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019461341.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.271 kcal (2) G-P(sol) polarization free energy of solvation -63.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds