Wall clock time and date at job start Mon Mar 30 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46731 * 2 1 4 4 N 1.46495 * 109.46976 * 240.00244 * 2 1 3 5 5 C 1.36935 * 119.99909 * 85.00345 * 4 2 1 6 6 H 1.08001 * 120.00712 * 359.97438 * 5 4 2 7 7 C 1.38818 * 120.00127 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99313 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00282 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47359 * 59.99485 * 9 7 5 11 11 H 1.48504 * 109.47266 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47123 * 299.99461 * 9 7 5 13 13 C 1.50697 * 109.47013 * 119.99947 * 2 1 3 14 14 C 1.34515 * 125.79159 * 259.99739 * 13 2 1 15 15 C 1.41385 * 106.84000 * 180.02562 * 14 13 2 16 16 C 1.34507 * 106.84104 * 0.02562 * 15 14 13 17 17 O 1.34300 * 108.42410 * 359.97438 * 16 15 14 18 18 H 1.09005 * 109.47347 * 59.99581 * 1 2 3 19 19 H 1.08993 * 109.46989 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.47114 * 300.00230 * 1 2 3 21 21 H 0.96993 * 120.00028 * 264.99437 * 4 2 1 22 22 H 0.97013 * 119.99636 * 180.02562 * 8 7 5 23 23 H 1.08001 * 126.57671 * 0.29417 * 14 13 2 24 24 H 1.08003 * 126.57418 * 180.02562 * 15 14 13 25 25 H 1.08001 * 125.78847 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3757 6 1 1.8919 1.0405 -2.4243 7 6 2.6113 -0.6618 -3.5093 8 7 2.9242 -1.9389 -3.4502 9 14 2.7891 0.2700 -5.1185 10 1 3.7444 1.3924 -4.9377 11 1 3.2981 -0.6484 -6.1686 12 1 1.4666 0.8067 -5.5284 13 6 2.0323 -0.7104 1.2305 14 6 2.4732 -0.1191 2.3553 15 6 2.8443 -1.1543 3.2439 16 6 2.6085 -2.3163 2.6086 17 8 2.1165 -2.0413 1.3896 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 2.2490 -1.6316 -1.1526 22 1 3.2476 -2.3962 -4.2423 23 1 2.5286 0.9427 2.5451 24 1 3.2409 -1.0350 4.2413 25 1 2.7841 -3.3030 3.0110 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035206985.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:59 Heat of formation + Delta-G solvation = 22.035345 kcal Electronic energy + Delta-G solvation = -10582.747271 eV Core-core repulsion = 8563.369402 eV Total energy + Delta-G solvation = -2019.377868 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.03234 -35.50609 -32.59539 -32.00157 -29.04358 -27.67953 -24.08007 -21.94797 -21.17114 -19.53887 -17.48424 -16.57755 -15.46391 -14.86353 -14.05459 -13.66558 -12.89024 -12.52021 -12.34468 -12.24500 -12.01671 -11.39049 -10.84919 -10.73966 -10.64863 -10.11285 -9.72343 -9.46050 -8.97888 -7.95176 -7.02377 -5.77774 -3.08603 2.27105 3.07065 3.43890 3.48092 3.49462 3.56366 4.57373 5.19007 5.43212 5.46960 5.54460 5.78993 6.01997 6.16721 6.24243 6.30437 6.49716 6.59718 6.67305 6.96608 6.98741 7.63567 7.72176 8.39097 9.50845 10.04476 10.41280 11.44355 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.069199 B = 0.010655 C = 0.010014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.533913 B = 2627.222719 C = 2795.416215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.246 3.754 3 H 0.075 0.925 4 N -0.721 5.721 5 C -0.247 4.247 6 H 0.073 0.927 7 C -0.010 4.010 8 N -0.929 5.929 9 Si 0.910 3.090 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.285 1.285 13 C 0.022 3.978 14 C -0.234 4.234 15 C -0.216 4.216 16 C -0.059 4.059 17 O -0.165 6.165 18 H 0.064 0.936 19 H 0.051 0.949 20 H 0.041 0.959 21 H 0.390 0.610 22 H 0.257 0.743 23 H 0.142 0.858 24 H 0.141 0.859 25 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 1.967 10.227 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.136 3.864 3 H 0.093 0.907 4 N -0.363 5.363 5 C -0.378 4.378 6 H 0.091 0.909 7 C -0.207 4.207 8 N -0.577 5.577 9 Si 0.741 3.259 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.211 1.211 13 C -0.030 4.030 14 C -0.254 4.254 15 C -0.235 4.235 16 C -0.127 4.127 17 O -0.060 6.060 18 H 0.083 0.917 19 H 0.070 0.930 20 H 0.060 0.940 21 H 0.224 0.776 22 H 0.067 0.933 23 H 0.160 0.840 24 H 0.158 0.842 25 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.988 1.858 9.839 10.208 hybrid contribution 0.340 0.191 -0.577 0.696 sum -1.648 2.048 9.263 9.628 Atomic orbital electron populations 1.22470 0.97705 1.01630 1.00581 1.18963 0.92408 0.93936 0.81094 0.90737 1.42426 1.78013 1.11028 1.04783 1.19206 1.37488 0.94045 0.87049 0.90887 1.24786 1.01696 0.95988 0.98192 1.69682 1.50177 1.08710 1.29104 0.86225 0.77834 0.78582 0.83263 1.21155 1.21644 1.21135 1.23414 1.01127 0.80202 0.98292 1.21475 1.09109 1.00203 0.94615 1.21702 1.07898 0.92526 1.01420 1.23911 1.04382 1.00058 0.84383 1.84081 1.64233 1.25210 1.32501 0.91748 0.93030 0.93963 0.77603 0.93328 0.83981 0.84151 0.78832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.47 37.16 0.35 -2.73 15 2 C 0.25 5.21 3.35 -69.09 -0.23 4.97 15 3 H 0.07 1.52 8.07 -51.93 -0.42 1.10 15 4 N -0.72 -18.89 5.11 -54.55 -0.28 -19.16 15 5 C -0.25 -6.94 9.93 -15.06 -0.15 -7.09 15 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 15 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 15 8 N -0.93 -28.57 13.06 55.49 0.72 -27.85 15 9 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 15 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 13 C 0.02 0.43 6.12 -35.63 -0.22 0.21 15 14 C -0.23 -4.02 10.80 -39.70 -0.43 -4.45 15 15 C -0.22 -3.31 10.91 -39.70 -0.43 -3.74 15 16 C -0.06 -0.94 12.09 29.41 0.36 -0.58 15 17 O -0.17 -3.31 10.31 5.71 0.06 -3.25 15 18 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 19 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.39 11.05 7.51 -40.82 -0.31 10.74 15 22 H 0.26 7.61 8.31 -40.81 -0.34 7.27 15 23 H 0.14 2.11 8.06 -52.49 -0.42 1.69 15 24 H 0.14 1.70 8.06 -52.48 -0.42 1.28 15 25 H 0.19 2.22 8.06 -52.49 -0.42 1.80 15 LS Contribution 227.85 15.07 3.43 3.43 Total: -1.00 -31.19 227.85 -4.74 -35.93 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -2.81 Total: 7.31 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.85 Total: -13.79 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.45 Total: -47.01 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: 0.06 Total: -3.25 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.19 -4.74 -35.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035206985.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.964 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds