Wall clock time and date at job start Mon Mar 30 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46731 * 2 1 4 4 N 1.46495 * 109.46976 * 240.00244 * 2 1 3 5 5 C 1.36935 * 119.99909 * 85.00345 * 4 2 1 6 6 H 1.08001 * 120.00712 * 359.97438 * 5 4 2 7 7 C 1.38818 * 120.00127 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99313 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00282 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47359 * 59.99485 * 9 7 5 11 11 H 1.48504 * 109.47266 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47123 * 299.99461 * 9 7 5 13 13 C 1.50697 * 109.47013 * 119.99947 * 2 1 3 14 14 C 1.34515 * 125.79159 * 259.99739 * 13 2 1 15 15 C 1.41385 * 106.84000 * 180.02562 * 14 13 2 16 16 C 1.34507 * 106.84104 * 0.02562 * 15 14 13 17 17 O 1.34300 * 108.42410 * 359.97438 * 16 15 14 18 18 H 1.09005 * 109.47347 * 59.99581 * 1 2 3 19 19 H 1.08993 * 109.46989 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.47114 * 300.00230 * 1 2 3 21 21 H 0.96993 * 120.00028 * 264.99437 * 4 2 1 22 22 H 0.97013 * 119.99636 * 180.02562 * 8 7 5 23 23 H 1.08001 * 126.57671 * 0.29417 * 14 13 2 24 24 H 1.08003 * 126.57418 * 180.02562 * 15 14 13 25 25 H 1.08001 * 125.78847 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3757 6 1 1.8919 1.0405 -2.4243 7 6 2.6113 -0.6618 -3.5093 8 7 2.9242 -1.9389 -3.4502 9 14 2.7891 0.2700 -5.1185 10 1 3.7444 1.3924 -4.9377 11 1 3.2981 -0.6484 -6.1686 12 1 1.4666 0.8067 -5.5284 13 6 2.0323 -0.7104 1.2305 14 6 2.4732 -0.1191 2.3553 15 6 2.8443 -1.1543 3.2439 16 6 2.6085 -2.3163 2.6086 17 8 2.1165 -2.0413 1.3896 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 2.2490 -1.6316 -1.1526 22 1 3.2476 -2.3962 -4.2423 23 1 2.5286 0.9427 2.5451 24 1 3.2409 -1.0350 4.2413 25 1 2.7841 -3.3030 3.0110 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035206985.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:59 Heat of formation + Delta-G solvation = 1.159306 kcal Electronic energy + Delta-G solvation = -10583.652524 eV Core-core repulsion = 8563.369402 eV Total energy + Delta-G solvation = -2020.283121 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.38219 -37.31943 -34.26111 -33.64876 -30.85796 -29.14945 -26.06932 -23.52792 -22.52697 -20.98098 -19.42658 -18.10326 -16.89534 -16.64276 -15.82913 -15.48086 -14.47818 -14.26978 -13.70479 -13.61131 -13.33558 -13.21675 -12.74829 -12.53500 -12.34990 -12.03055 -11.74343 -11.03822 -10.74353 -9.31608 -9.08639 -7.95458 -5.27339 0.92875 1.48288 1.52333 1.58247 1.80503 2.26257 2.56116 3.38734 3.79574 3.99303 4.22484 4.31450 4.46269 4.62010 4.91206 4.93196 5.07000 5.12718 5.27004 5.44624 5.47929 5.74104 6.21770 6.38199 7.30268 8.00406 8.26600 9.28061 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.069199 B = 0.010655 C = 0.010014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.533913 B = 2627.222719 C = 2795.416215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.240 3.760 3 H 0.082 0.918 4 N -0.737 5.737 5 C -0.249 4.249 6 H 0.085 0.915 7 C -0.077 4.077 8 N -0.972 5.972 9 Si 0.980 3.020 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.274 1.274 13 C -0.021 4.021 14 C -0.223 4.223 15 C -0.217 4.217 16 C -0.061 4.061 17 O -0.198 6.198 18 H 0.055 0.945 19 H 0.037 0.963 20 H 0.075 0.925 21 H 0.373 0.627 22 H 0.252 0.748 23 H 0.164 0.836 24 H 0.177 0.823 25 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 3.055 11.534 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.132 3.868 3 H 0.099 0.901 4 N -0.378 5.378 5 C -0.380 4.380 6 H 0.103 0.897 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.809 3.191 10 H -0.201 1.201 11 H -0.223 1.223 12 H -0.200 1.200 13 C -0.072 4.072 14 C -0.242 4.242 15 C -0.236 4.236 16 C -0.127 4.127 17 O -0.095 6.095 18 H 0.075 0.925 19 H 0.056 0.944 20 H 0.094 0.906 21 H 0.205 0.795 22 H 0.060 0.940 23 H 0.181 0.819 24 H 0.194 0.806 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.005 2.998 11.189 11.756 hybrid contribution 0.332 -0.153 -0.806 0.885 sum -1.673 2.845 10.383 10.895 Atomic orbital electron populations 1.22298 0.96008 1.01073 1.01768 1.19134 0.93482 0.94006 0.80191 0.90073 1.42622 1.78558 1.10494 1.06082 1.19684 1.35800 0.94604 0.87883 0.89694 1.25681 1.02425 0.96904 1.01854 1.69863 1.52181 1.10519 1.29673 0.85114 0.78158 0.77203 0.78674 1.20112 1.22324 1.20014 1.23179 1.04484 0.80683 0.98873 1.21870 1.06802 1.01722 0.93831 1.22136 1.07350 0.91493 1.02644 1.24832 1.02701 1.02265 0.82941 1.84044 1.65305 1.25485 1.34630 0.92545 0.94426 0.90640 0.79495 0.93959 0.81855 0.80573 0.75084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 9.47 71.98 0.68 -4.92 15 2 C 0.24 10.09 3.35 44.25 0.15 10.24 15 3 H 0.08 3.24 8.07 -2.38 -0.02 3.22 15 4 N -0.74 -39.28 5.11 -326.50 -1.67 -40.94 15 5 C -0.25 -14.03 9.93 84.04 0.83 -13.19 15 6 H 0.09 4.47 7.83 -2.91 -0.02 4.44 15 7 C -0.08 -4.47 5.50 84.86 0.47 -4.00 15 8 N -0.97 -61.28 13.06 21.65 0.28 -60.99 15 9 Si 0.98 46.39 29.55 68.60 2.03 48.41 15 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 15 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 13 C -0.02 -0.83 6.12 24.83 0.15 -0.67 15 14 C -0.22 -7.11 10.80 22.19 0.24 -6.87 15 15 C -0.22 -5.95 10.91 22.19 0.24 -5.70 15 16 C -0.06 -1.78 12.09 66.97 0.81 -0.97 15 17 O -0.20 -7.85 10.31 -2.50 -0.03 -7.87 15 18 H 0.06 2.13 8.14 -2.38 -0.02 2.11 15 19 H 0.04 1.46 8.14 -2.39 -0.02 1.44 15 20 H 0.07 2.25 8.14 -2.38 -0.02 2.23 15 21 H 0.37 21.91 7.51 -92.71 -0.70 21.21 15 22 H 0.25 15.33 8.31 -92.70 -0.77 14.56 15 23 H 0.16 4.35 8.06 -2.91 -0.02 4.32 15 24 H 0.18 3.45 8.06 -2.91 -0.02 3.43 15 25 H 0.23 4.56 8.06 -2.91 -0.02 4.54 15 Total: -1.00 -67.57 227.85 4.67 -62.90 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.48 Total: 24.60 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 3.57 Total: -26.10 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -1.39 Total: -101.94 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.03 Total: -7.87 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -67.57 4.67 -62.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035206985.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.058 kcal (2) G-P(sol) polarization free energy of solvation -67.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds