Wall clock time and date at job start Mon Mar 30 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48503 * 109.47136 * 269.99920 * 3 2 1 5 5 H 1.48502 * 109.47203 * 29.99863 * 3 2 1 6 6 H 1.48503 * 109.47169 * 149.99829 * 3 2 1 7 7 C 1.38608 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99892 * 180.02562 * 7 2 1 9 9 O 1.34762 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99863 * 185.05000 * 9 7 2 11 11 C 1.37953 * 120.47286 * 354.55192 * 10 9 7 12 12 C 1.40105 * 119.10280 * 179.72414 * 11 10 9 13 13 C 1.35360 * 120.03231 * 0.24814 * 12 11 10 14 14 N 1.35859 * 120.97392 * 359.97438 * 13 12 11 15 15 H 0.97001 * 119.53967 * 179.97438 * 14 13 12 16 16 C 1.34648 * 120.91562 * 0.02562 * 14 13 12 17 17 O 1.22035 * 120.03794 * 179.97438 * 16 14 13 18 18 H 0.96995 * 119.99816 * 0.02562 * 1 2 3 19 19 H 1.08000 * 120.44634 * 359.97438 * 11 10 9 20 20 H 1.07995 * 119.98649 * 180.22682 * 12 11 10 21 21 H 1.07996 * 119.51104 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.4974 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5474 1.4403 0.7001 7 6 2.0090 -1.2003 0.0005 8 1 3.0890 -1.2003 0.0010 9 8 1.3352 -2.3674 0.0016 10 6 2.0706 -3.5035 0.1085 11 6 3.4490 -3.4483 0.0977 12 6 4.1796 -4.6379 0.2158 13 6 3.5329 -5.8212 0.3333 14 7 2.1756 -5.8787 0.3397 15 1 1.7336 -6.7380 0.4246 16 6 1.4353 -4.7594 0.2286 17 8 0.2170 -4.8296 0.2357 18 1 -0.4849 0.8400 -0.0004 19 1 3.9580 -2.5004 0.0035 20 1 5.2592 -4.6109 0.2126 21 1 4.1045 -6.7330 0.4242 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036223288.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:49 Heat of formation + Delta-G solvation = -57.498600 kcal Electronic energy + Delta-G solvation = -10405.666069 eV Core-core repulsion = 8247.006256 eV Total energy + Delta-G solvation = -2158.659814 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.97859 -39.28763 -37.77664 -34.47776 -33.28823 -30.06754 -27.62228 -24.72942 -23.68169 -20.57937 -19.36309 -18.17180 -17.52032 -17.00572 -16.65362 -16.10125 -15.22035 -15.05482 -14.77181 -13.65390 -13.33225 -12.96905 -12.84042 -12.74132 -12.12555 -11.71183 -11.03689 -10.90921 -10.43696 -8.50000 -8.43916 -6.13251 0.14612 1.04493 1.34911 1.46535 1.55367 1.92383 2.27444 2.72577 3.09236 3.52538 4.10819 4.25214 4.46699 4.52534 5.00368 5.35386 5.42618 5.58041 5.92588 6.00940 6.16241 6.90421 7.11141 7.79112 8.74540 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.067346 B = 0.012800 C = 0.010805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.664968 B = 2186.986656 C = 2590.751920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.030 4.030 3 Si 1.031 2.969 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.410 4.410 8 H 0.112 0.888 9 O -0.218 6.218 10 C -0.030 4.030 11 C -0.192 4.192 12 C -0.171 4.171 13 C 0.057 3.943 14 N -0.574 5.574 15 H 0.429 0.571 16 C 0.504 3.496 17 O -0.611 6.611 18 H 0.274 0.726 19 H 0.129 0.871 20 H 0.178 0.822 21 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.727 -8.071 0.821 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.227 4.227 3 Si 0.848 3.152 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.486 4.486 8 H 0.129 0.871 9 O -0.123 6.123 10 C -0.083 4.083 11 C -0.216 4.216 12 C -0.193 4.193 13 C -0.067 4.067 14 N -0.210 5.210 15 H 0.270 0.730 16 C 0.304 3.696 17 O -0.499 6.499 18 H 0.083 0.917 19 H 0.147 0.853 20 H 0.195 0.805 21 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 11.664 -7.783 0.794 14.044 hybrid contribution -0.365 0.551 -0.015 0.661 sum 11.299 -7.232 0.778 13.437 Atomic orbital electron populations 1.70284 1.08558 1.29052 1.47792 1.26876 0.96890 1.03342 0.95638 0.84439 0.77810 0.73509 0.79417 1.18548 1.19802 1.16803 1.22047 0.92969 0.81098 1.52492 0.87086 1.83924 1.35636 1.12062 1.80702 1.20748 0.92539 0.88404 1.06634 1.21625 0.91487 1.01342 1.07127 1.20750 1.01789 0.89611 1.07120 1.22395 0.81328 1.01767 1.01195 1.42808 1.07959 1.09468 1.60753 0.73049 1.16490 0.86635 0.85101 0.81385 1.90903 1.14962 1.87379 1.56701 0.91704 0.85335 0.80484 0.76246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.50 13.67 21.61 0.30 -59.20 14 2 C -0.03 -1.75 5.49 84.82 0.47 -1.29 14 3 Si 1.03 43.18 29.55 68.60 2.03 45.20 14 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 14 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 14 6 H -0.24 -9.23 7.11 99.48 0.71 -8.52 14 7 C -0.41 -24.63 9.49 67.91 0.64 -23.99 14 8 H 0.11 5.86 5.25 -2.91 -0.02 5.84 14 9 O -0.22 -14.20 9.56 -6.36 -0.06 -14.26 14 10 C -0.03 -1.57 6.71 22.94 0.15 -1.41 14 11 C -0.19 -7.84 9.26 22.66 0.21 -7.63 14 12 C -0.17 -4.59 10.00 22.06 0.22 -4.37 14 13 C 0.06 1.24 11.16 83.40 0.93 2.17 14 14 N -0.57 -17.44 5.24 -318.88 -1.67 -19.11 14 15 H 0.43 9.80 8.89 -92.71 -0.82 8.98 14 16 C 0.50 24.09 7.71 85.00 0.66 24.75 14 17 O -0.61 -35.30 17.73 10.30 0.18 -35.12 14 18 H 0.27 16.10 8.31 -92.71 -0.77 15.33 14 19 H 0.13 5.26 5.70 -2.91 -0.02 5.24 14 20 H 0.18 3.11 8.06 -2.91 -0.02 3.09 14 21 H 0.22 1.83 8.06 -2.91 -0.02 1.80 14 Total: -1.00 -86.98 201.17 4.50 -82.48 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.45 Total: 11.78 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 3.28 Total: -11.77 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.38 Total: -78.32 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: 0.12 Total: -49.38 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -86.98 4.50 -82.48 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036223288.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.980 kcal (2) G-P(sol) polarization free energy of solvation -86.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds