Wall clock time and date at job start Mon Mar 30 2020 02:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86807 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47239 * 299.99895 * 3 2 1 6 6 H 1.48498 * 109.46975 * 59.99980 * 3 2 1 7 7 C 1.39913 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99834 * 195.33837 * 7 2 1 9 9 C 1.41034 * 120.00060 * 15.33162 * 7 2 1 10 10 C 1.40732 * 120.28870 * 25.53110 * 9 7 2 11 11 C 1.37604 * 119.80885 * 179.97438 * 10 9 7 12 12 F 1.35107 * 119.78951 * 179.97438 * 11 10 9 13 13 C 1.39139 * 120.41744 * 359.75187 * 11 10 9 14 14 C 1.38135 * 120.60180 * 0.50906 * 13 11 10 15 15 C 1.38706 * 120.17032 * 359.48944 * 14 13 11 16 16 N 1.38814 * 120.20760 * 180.23516 * 15 14 13 17 17 H 0.96994 * 119.99632 * 0.02562 * 1 2 3 18 18 H 1.08003 * 120.09807 * 359.95592 * 10 9 7 19 19 H 1.07996 * 119.70250 * 180.28053 * 13 11 10 20 20 H 1.07996 * 119.91555 * 179.76790 * 14 13 11 21 21 H 0.97001 * 119.99886 * 359.97438 * 16 15 14 22 22 H 0.97000 * 119.99699 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8842 2.3965 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0085 -1.2117 -0.0005 8 1 3.0597 -1.2284 0.2469 9 6 1.3410 -2.4112 -0.3240 10 6 0.1923 -2.3874 -1.1366 11 6 -0.4510 -3.5637 -1.4465 12 9 -1.5541 -3.5403 -2.2262 13 6 0.0302 -4.7775 -0.9657 14 6 1.1532 -4.8203 -0.1624 15 6 1.8208 -3.6495 0.1653 16 7 2.9522 -3.6920 0.9685 17 1 -0.4849 0.8400 -0.0004 18 1 -0.1836 -1.4485 -1.5157 19 1 -0.4810 -5.6942 -1.2198 20 1 1.5148 -5.7682 0.2077 21 1 3.2780 -4.5424 1.3027 22 1 3.4165 -2.8713 1.1961 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038665257.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:06 Heat of formation + Delta-G solvation = -36.249386 kcal Electronic energy + Delta-G solvation = -10381.010195 eV Core-core repulsion = 8235.644606 eV Total energy + Delta-G solvation = -2145.365589 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.41580 -37.66202 -33.67574 -32.82965 -29.64197 -27.09136 -25.14340 -21.42074 -20.27998 -17.47151 -16.23188 -15.66280 -15.28194 -14.69163 -14.12013 -13.78387 -12.94025 -12.56254 -11.81652 -11.70058 -11.50789 -11.23247 -11.07417 -10.44245 -10.17085 -9.47968 -9.21799 -9.01461 -7.51984 -6.78101 -6.27584 -4.25442 2.71655 3.00375 3.07633 3.11554 3.15207 3.92822 4.59811 5.17256 5.59138 5.86117 6.29126 6.39004 6.89635 7.00169 7.18965 7.39292 7.52093 7.77425 7.86528 8.15718 8.45293 8.67380 8.75796 8.99312 9.06341 10.22211 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.043993 B = 0.016498 C = 0.012373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.310244 B = 1696.724910 C = 2262.419800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.082 3.918 10 C -0.177 4.177 11 C 0.059 3.941 12 F -0.172 7.172 13 C -0.227 4.227 14 C -0.163 4.163 15 C 0.113 3.887 16 N -0.883 5.883 17 H 0.280 0.720 18 H 0.131 0.869 19 H 0.098 0.902 20 H 0.096 0.904 21 H 0.378 0.622 22 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 -1.457 0.714 3.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.077 3.923 10 C -0.199 4.199 11 C 0.039 3.961 12 F -0.152 7.152 13 C -0.248 4.248 14 C -0.187 4.187 15 C 0.012 3.988 16 N -0.424 5.424 17 H 0.091 0.909 18 H 0.148 0.852 19 H 0.116 0.884 20 H 0.114 0.886 21 H 0.204 0.796 22 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.989 -1.267 0.654 3.311 hybrid contribution 0.359 0.720 0.158 0.820 sum 3.347 -0.547 0.812 3.488 Atomic orbital electron populations 1.69839 1.07447 1.28998 1.35897 1.25846 0.94756 1.01155 0.92610 0.86255 0.80718 0.81147 0.78517 1.18561 1.19775 1.20112 1.19196 0.96815 0.90799 1.42252 0.90522 1.17022 0.92749 0.90722 0.91795 1.21040 0.99928 0.95951 1.02993 1.17555 0.86199 0.95201 0.97172 1.91302 1.52475 1.97627 1.73756 1.20041 1.01440 0.95012 1.08278 1.19762 0.98708 0.95255 1.04956 1.17973 0.90822 0.93883 0.96140 1.41876 1.31534 1.09667 1.59337 0.90933 0.85150 0.88414 0.88592 0.79609 0.77913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.80 10.88 55.55 0.60 -20.20 14 2 C 0.07 1.83 5.19 -17.33 -0.09 1.74 14 3 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 14 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 14 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 14 6 H -0.28 -5.54 7.11 56.52 0.40 -5.14 14 7 C -0.46 -11.81 8.50 -37.90 -0.32 -12.13 14 8 H 0.08 1.84 6.68 -52.48 -0.35 1.48 14 9 C 0.08 2.17 5.58 -106.64 -0.60 1.57 14 10 C -0.18 -4.81 8.64 -38.87 -0.34 -5.15 14 11 C 0.06 1.52 7.28 -39.48 -0.29 1.23 14 12 F -0.17 -4.29 17.26 2.25 0.04 -4.25 14 13 C -0.23 -5.34 10.01 -39.28 -0.39 -5.73 14 14 C -0.16 -3.67 9.87 -39.45 -0.39 -4.05 14 15 C 0.11 2.68 6.79 -83.28 -0.57 2.12 14 16 N -0.88 -17.10 8.98 32.72 0.29 -16.81 14 17 H 0.28 6.67 8.30 -40.82 -0.34 6.33 14 18 H 0.13 3.68 6.14 -52.48 -0.32 3.36 14 19 H 0.10 2.06 8.06 -52.49 -0.42 1.64 14 20 H 0.10 1.86 8.06 -52.49 -0.42 1.43 14 21 H 0.38 6.07 8.83 -40.82 -0.36 5.71 14 22 H 0.39 7.39 7.05 -40.82 -0.29 7.10 14 LS Contribution 203.00 15.07 3.06 3.06 Total: -1.00 -27.86 203.00 -5.31 -33.17 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -1.30 Total: 11.99 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -2.98 Total: -20.41 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.90 Total: -37.01 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.04 Total: -4.25 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -27.86 -5.31 -33.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038665257.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.075 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds