Wall clock time and date at job start Mon Mar 30 2020 02:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30922 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47378 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47354 * 120.00390 * 3 2 1 6 6 H 1.48502 * 109.46953 * 240.00018 * 3 2 1 7 7 C 1.39851 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99998 * 154.61174 * 7 2 1 9 9 C 1.41073 * 119.99841 * 334.61089 * 7 2 1 10 10 C 1.40866 * 120.17201 * 334.38746 * 9 7 2 11 11 C 1.36261 * 119.97387 * 179.76238 * 10 9 7 12 12 C 1.39639 * 120.35234 * 0.49303 * 11 10 9 13 13 N 1.38878 * 119.82541 * 179.75913 * 12 11 10 14 14 C 1.39413 * 120.35076 * 359.78608 * 12 11 10 15 15 C 1.37628 * 120.01360 * 359.94986 * 14 12 11 16 16 F 1.35100 * 120.17069 * 180.02562 * 15 14 12 17 17 H 0.97002 * 120.00440 * 174.18698 * 1 2 3 18 18 H 1.07994 * 120.01754 * 0.02562 * 10 9 7 19 19 H 1.08008 * 119.82301 * 180.23753 * 11 10 9 20 20 H 0.96995 * 120.00111 * 180.02562 * 13 12 11 21 21 H 0.96999 * 119.99819 * 0.02562 * 13 12 11 22 22 H 1.07997 * 119.98685 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 1.2782 2.7465 -0.0006 5 1 3.0970 1.6965 1.2124 6 1 3.0969 1.6964 -1.2125 7 6 2.0085 -1.2111 -0.0005 8 1 3.0102 -1.2561 -0.4016 9 6 1.4054 -2.3741 0.5228 10 6 0.3930 -2.2696 1.4967 11 6 -0.1902 -3.3954 1.9959 12 6 0.2171 -4.6561 1.5548 13 7 -0.3813 -5.7964 2.0746 14 6 1.2218 -4.7761 0.5956 15 6 1.8171 -3.6486 0.0775 16 9 2.7906 -3.7613 -0.8525 17 1 -0.4851 -0.8357 -0.0851 18 1 0.0763 -1.2975 1.8446 19 1 -0.9689 -3.3123 2.7398 20 1 -0.1001 -6.6734 1.7703 21 1 -1.0805 -5.7158 2.7420 22 1 1.5325 -5.7541 0.2590 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039048439.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:20 Heat of formation + Delta-G solvation = -59.191487 kcal Electronic energy + Delta-G solvation = -10370.232688 eV Core-core repulsion = 8223.872254 eV Total energy + Delta-G solvation = -2146.360433 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.31654 -39.69481 -36.51242 -33.99779 -31.14417 -30.07384 -26.25253 -23.30375 -22.63196 -19.88507 -18.24621 -17.86477 -16.55702 -16.16154 -15.98282 -15.62008 -15.35118 -14.59415 -14.29866 -13.58227 -13.25190 -12.91522 -12.68688 -11.95121 -11.89561 -11.50255 -11.14273 -10.63658 -9.57239 -9.15938 -8.55406 -6.21146 0.66935 0.91662 1.52207 1.64814 1.82188 2.36894 2.66634 3.27189 3.41948 4.01999 4.17368 4.39492 4.81151 4.98331 5.29422 5.43090 5.55109 5.73958 5.82003 6.07326 6.24057 6.63817 6.87875 6.98643 7.30159 8.10582 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.059233 B = 0.014136 C = 0.011891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.597625 B = 1980.266571 C = 2354.170332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.006 3.994 3 Si 1.116 2.884 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.566 4.566 8 H 0.058 0.942 9 C 0.003 3.997 10 C -0.161 4.161 11 C -0.161 4.161 12 C 0.136 3.864 13 N -0.870 5.870 14 C -0.195 4.195 15 C -0.023 4.023 16 F -0.169 7.169 17 H 0.281 0.719 18 H 0.103 0.897 19 H 0.130 0.870 20 H 0.400 0.600 21 H 0.402 0.598 22 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 -4.464 3.610 5.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.208 4.208 3 Si 0.934 3.066 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.595 4.595 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.181 4.181 11 C -0.183 4.183 12 C 0.033 3.967 13 N -0.414 5.414 14 C -0.219 4.219 15 C -0.043 4.043 16 F -0.148 7.148 17 H 0.093 0.907 18 H 0.121 0.879 19 H 0.147 0.853 20 H 0.229 0.771 21 H 0.232 0.768 22 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.023 -2.788 3.610 4.674 hybrid contribution 0.266 -2.105 -0.327 2.147 sum -0.756 -4.893 3.283 5.941 Atomic orbital electron populations 1.70626 1.08571 1.32809 1.32991 1.28294 0.95736 1.06947 0.89844 0.83016 0.74777 0.69998 0.78856 1.19119 1.18792 1.18964 1.20367 1.03033 0.95676 1.40455 0.92371 1.17892 0.95616 0.91915 0.94657 1.20608 1.00845 0.97946 0.98688 1.20322 1.03228 0.90927 1.03827 1.17072 0.95195 0.87964 0.96441 1.41698 1.45501 1.04426 1.49815 1.20219 1.01774 0.96702 1.03160 1.17843 0.95637 0.94908 0.95946 1.91234 1.61879 1.96945 1.64767 0.90665 0.87874 0.85251 0.77143 0.76848 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.68 12.32 21.81 0.27 -45.41 14 2 C 0.01 0.33 4.93 85.22 0.42 0.75 14 3 Si 1.12 45.30 30.00 68.60 2.06 47.36 14 4 H -0.27 -10.38 7.11 99.48 0.71 -9.67 14 5 H -0.26 -10.07 7.11 99.48 0.71 -9.36 14 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 14 7 C -0.57 -32.72 8.69 23.36 0.20 -32.51 14 8 H 0.06 3.42 7.80 -2.91 -0.02 3.40 14 9 C 0.00 0.18 5.30 -21.23 -0.11 0.07 14 10 C -0.16 -8.21 7.88 22.45 0.18 -8.03 14 11 C -0.16 -6.86 9.81 22.15 0.22 -6.65 14 12 C 0.14 5.37 6.76 38.65 0.26 5.64 14 13 N -0.87 -24.29 9.05 -51.10 -0.46 -24.75 14 14 C -0.19 -8.60 9.85 22.41 0.22 -8.38 14 15 C -0.02 -1.19 7.30 22.84 0.17 -1.03 14 16 F -0.17 -9.06 16.72 44.97 0.75 -8.31 14 17 H 0.28 16.07 6.69 -92.71 -0.62 15.45 14 18 H 0.10 5.44 6.48 -2.91 -0.02 5.43 14 19 H 0.13 4.62 8.06 -2.91 -0.02 4.60 14 20 H 0.40 9.27 8.83 -92.71 -0.82 8.45 14 21 H 0.40 9.15 8.83 -92.71 -0.82 8.34 14 22 H 0.13 4.88 8.06 -2.91 -0.02 4.86 14 Total: -1.00 -63.15 204.66 3.95 -59.21 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.22 Total: 22.06 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 1.55 Total: -50.15 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -0.19 Total: -70.16 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 0.75 Total: -8.31 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.06 Total: 47.36 kcal Total: -63.15 3.95 -59.21 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039048439.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.015 kcal (2) G-P(sol) polarization free energy of solvation -63.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds