Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 C 1.50700 * 109.47230 * 180.02562 * 3 2 1 5 5 O 1.33757 * 127.06472 * 269.99980 * 4 3 2 6 6 N 1.20563 * 113.30201 * 180.02562 * 5 4 3 7 7 C 1.29848 * 112.94345 * 359.71093 * 6 5 4 8 8 C 1.39667 * 127.06331 * 90.00402 * 4 3 2 9 9 C 1.41477 * 128.73880 * 359.97181 * 8 4 3 10 10 H 1.07996 * 119.99962 * 12.41057 * 9 8 4 11 11 C 1.39731 * 119.99810 * 192.40542 * 9 8 4 12 12 N 1.31000 * 120.00074 * 172.10381 * 11 9 8 13 13 Si 1.86803 * 119.99976 * 352.10943 * 11 9 8 14 14 H 1.48499 * 109.46926 * 179.97438 * 13 11 9 15 15 H 1.48507 * 109.46913 * 299.99481 * 13 11 9 16 16 H 1.48504 * 109.47330 * 59.99448 * 13 11 9 17 17 H 1.09000 * 109.47210 * 299.99696 * 1 2 3 18 18 H 1.08999 * 109.47398 * 59.99896 * 1 2 3 19 19 H 1.09003 * 109.47322 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47080 * 239.99838 * 2 1 3 21 21 H 1.09003 * 109.47285 * 120.00600 * 2 1 3 22 22 H 1.09000 * 109.46708 * 59.99997 * 3 2 1 23 23 H 1.08999 * 109.46947 * 300.00380 * 3 2 1 24 24 H 1.07993 * 127.31988 * 180.27488 * 7 6 5 25 25 H 0.97006 * 119.99805 * 354.48883 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.3537 1.4423 1.0663 6 7 5.5245 1.4428 0.7790 7 6 5.7312 1.4373 -0.5029 8 6 4.3883 1.4427 -1.1155 9 6 4.0407 1.4424 -2.4869 10 1 3.0226 1.6430 -2.7859 11 6 5.0149 1.1827 -3.4544 12 7 4.6681 1.0291 -4.7083 13 14 6.8117 1.0545 -2.9599 14 1 7.6372 0.7749 -4.1622 15 1 7.2485 2.3340 -2.3455 16 1 6.9776 -0.0479 -1.9787 17 1 -0.3634 0.5138 0.8900 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3634 -1.0277 0.0005 20 1 1.8933 -0.5139 -0.8900 21 1 1.8933 -0.5139 0.8899 22 1 1.6767 1.9563 0.8900 23 1 1.6766 1.9563 -0.8899 24 1 6.6833 1.4324 -1.0126 25 1 3.7297 1.0159 -4.9539 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039112818.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = 32.453624 kcal Electronic energy + Delta-G solvation = -10737.409802 eV Core-core repulsion = 8718.483704 eV Total energy + Delta-G solvation = -2018.926098 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.00368 -34.90616 -33.97463 -31.93415 -30.42267 -26.86608 -25.03703 -21.99927 -21.06556 -19.35522 -18.29629 -16.10703 -15.93771 -14.56153 -14.51962 -13.69787 -13.26804 -12.88440 -12.13549 -11.95790 -11.55395 -11.37472 -10.79473 -10.64825 -10.33671 -9.85555 -9.69875 -9.57368 -9.28837 -8.86265 -7.95596 -7.30684 -4.52994 2.82009 3.10253 3.15830 3.36197 3.60966 3.97123 4.65181 5.05436 5.47958 5.52571 5.59087 5.72001 5.91984 6.15710 6.27545 6.34118 6.35990 6.61439 6.82955 6.89549 7.08368 7.23368 7.55126 8.10847 8.27639 8.70344 9.80115 10.05339 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.041290 B = 0.016646 C = 0.012475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.974978 B = 1681.643442 C = 2244.037691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.013 3.987 4 C -0.247 4.247 5 O 0.086 5.914 6 N -0.373 5.373 7 C -0.124 4.124 8 C 0.008 3.992 9 C -0.485 4.485 10 H 0.082 0.918 11 C 0.043 3.957 12 N -0.827 5.827 13 Si 1.067 2.933 14 H -0.284 1.284 15 H -0.272 1.272 16 H -0.269 1.269 17 H 0.049 0.951 18 H 0.052 0.948 19 H 0.048 0.952 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.169 0.831 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -0.886 4.337 5.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.026 4.026 4 C -0.309 4.309 5 O 0.011 5.989 6 N -0.072 5.072 7 C -0.302 4.302 8 C 0.002 3.998 9 C -0.516 4.516 10 H 0.100 0.900 11 C -0.174 4.174 12 N -0.451 5.451 13 Si 0.896 3.104 14 H -0.211 1.211 15 H -0.199 1.199 16 H -0.196 1.196 17 H 0.069 0.931 18 H 0.071 0.929 19 H 0.067 0.933 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.185 0.815 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.183 -1.080 4.641 4.910 hybrid contribution -1.834 0.228 -0.350 1.881 sum -3.017 -0.852 4.291 5.315 Atomic orbital electron populations 1.21778 0.96606 1.00948 1.01324 1.21574 0.94352 0.97736 1.02290 1.19334 0.85889 0.96069 1.01300 1.23624 0.93537 1.28939 0.84784 1.84042 1.10618 1.69894 1.34363 1.72997 0.98032 1.17874 1.18321 1.26298 0.99686 1.13253 0.90933 1.20024 0.88547 0.96501 0.94703 1.19780 0.98649 1.44339 0.88807 0.90028 1.26969 1.07042 0.90803 0.92610 1.70613 1.22092 1.34670 1.17771 0.83847 0.73536 0.78326 0.74732 1.21075 1.19935 1.19581 0.93145 0.92936 0.93279 0.91604 0.92460 0.92463 0.90908 0.81462 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 15 2 C -0.12 -2.11 5.92 -26.73 -0.16 -2.27 15 3 C 0.01 0.24 5.68 -27.88 -0.16 0.08 15 4 C -0.25 -5.93 6.91 -33.77 -0.23 -6.16 15 5 O 0.09 2.11 11.06 18.01 0.20 2.31 15 6 N -0.37 -9.42 11.96 32.03 0.38 -9.03 15 7 C -0.12 -3.19 9.85 -14.57 -0.14 -3.34 15 8 C 0.01 0.21 6.04 -104.31 -0.63 -0.42 15 9 C -0.49 -13.13 9.75 -37.79 -0.37 -13.49 15 10 H 0.08 2.23 7.85 -52.49 -0.41 1.82 15 11 C 0.04 1.15 5.51 -17.35 -0.10 1.06 15 12 N -0.83 -22.30 13.66 55.54 0.76 -21.54 15 13 Si 1.07 24.27 24.45 -169.99 -4.16 20.11 15 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 15 H -0.27 -5.93 6.67 56.52 0.38 -5.56 15 16 H -0.27 -6.01 6.59 56.52 0.37 -5.64 15 17 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 18 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.07 1.42 7.94 -51.93 -0.41 1.01 15 24 H 0.17 4.02 2.99 -52.49 -0.16 3.87 15 25 H 0.29 7.45 8.73 -40.82 -0.36 7.09 15 LS Contribution 217.46 15.07 3.28 3.28 Total: -1.00 -28.03 217.46 -3.68 -31.71 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -2.72 Total: -0.61 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -1.42 Total: -26.23 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 1.14 Total: -30.57 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.20 Total: 2.31 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.16 Total: 20.11 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.03 -3.68 -31.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039112818.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.166 kcal (2) G-P(sol) polarization free energy of solvation -28.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds