Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46892 * 2 1 4 4 C 1.50698 * 109.47436 * 120.00003 * 2 1 3 5 5 C 1.39667 * 125.68538 * 275.00583 * 4 2 1 6 6 C 1.39378 * 107.57824 * 180.02562 * 5 4 2 7 7 C 1.39934 * 126.44203 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99756 * 359.97438 * 7 6 5 9 9 C 1.40423 * 119.99967 * 180.27326 * 7 6 5 10 10 N 1.30584 * 119.99892 * 359.71874 * 9 7 6 11 11 Si 1.86796 * 120.00277 * 179.72092 * 9 7 6 12 12 H 1.48504 * 109.47042 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47152 * 119.99539 * 11 9 7 14 14 H 1.48493 * 109.47284 * 239.99910 * 11 9 7 15 15 O 1.35130 * 107.11218 * 0.25424 * 6 5 4 16 16 N 1.30583 * 125.68753 * 95.02009 * 4 2 1 17 17 H 1.08998 * 109.47141 * 59.99672 * 1 2 3 18 18 H 1.08998 * 109.47196 * 180.02562 * 1 2 3 19 19 H 1.09008 * 109.46613 * 299.99900 * 1 2 3 20 20 H 1.08995 * 109.46963 * 239.99968 * 2 1 3 21 21 H 1.09007 * 109.46979 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.47496 * 300.00111 * 3 2 1 23 23 H 1.08995 * 109.47342 * 60.00200 * 3 2 1 24 24 H 1.07996 * 126.21214 * 0.02562 * 5 4 2 25 25 H 0.97004 * 119.99597 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2107 -0.1323 2.4893 6 6 2.6886 -1.1240 3.3441 7 6 3.0016 -0.9730 4.6996 8 1 2.8786 -0.0128 5.1785 9 6 3.4815 -2.0684 5.4356 10 7 3.6305 -3.2293 4.8564 11 14 3.9067 -1.8650 7.2431 12 1 3.6514 -0.4618 7.6568 13 1 3.0668 -2.7816 8.0553 14 1 5.3402 -2.1897 7.4539 15 8 2.7976 -2.2574 2.6164 16 7 2.3739 -1.9690 1.2973 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8901 20 1 1.8933 -0.5138 -0.8899 21 1 3.1301 1.4426 -0.0005 22 1 1.6766 1.9564 -0.8899 23 1 1.6767 1.9564 0.8899 24 1 2.0140 0.8965 2.7525 25 1 3.9616 -3.9860 5.3650 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039123949.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = 7.685742 kcal Electronic energy + Delta-G solvation = -10592.352526 eV Core-core repulsion = 8572.352413 eV Total energy + Delta-G solvation = -2020.000114 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.42343 -35.27814 -33.76166 -30.30257 -29.47738 -26.76061 -25.41816 -22.17714 -20.34829 -18.44721 -17.10923 -15.35176 -14.41393 -14.18427 -13.69816 -13.33501 -12.93036 -12.53698 -12.15939 -11.73044 -11.44490 -11.35544 -10.78854 -10.75957 -10.62221 -10.46514 -10.08827 -9.66587 -9.20929 -8.75875 -7.53218 -7.03369 -4.84518 2.76520 2.95265 3.02167 3.31308 3.74023 4.00830 4.76361 5.08405 5.44081 5.57392 5.69994 6.00866 6.05678 6.24512 6.30618 6.37629 6.62937 6.71684 6.83763 6.95024 7.34505 7.35602 7.81745 8.11192 8.38830 8.54566 9.42173 9.93976 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.083619 B = 0.010736 C = 0.010052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.771373 B = 2607.442745 C = 2784.841239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.019 4.019 3 C -0.135 4.135 4 C 0.114 3.886 5 C -0.459 4.459 6 C 0.233 3.767 7 C -0.431 4.431 8 H 0.106 0.894 9 C 0.067 3.933 10 N -0.753 5.753 11 Si 0.929 3.071 12 H -0.256 1.256 13 H -0.268 1.268 14 H -0.269 1.269 15 O -0.082 6.082 16 N -0.445 5.445 17 H 0.053 0.947 18 H 0.054 0.946 19 H 0.058 0.942 20 H 0.072 0.928 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.114 0.886 25 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 5.147 -0.951 5.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.039 4.039 3 C -0.193 4.193 4 C -0.048 4.048 5 C -0.489 4.489 6 C 0.172 3.828 7 C -0.461 4.461 8 H 0.124 0.876 9 C -0.158 4.158 10 N -0.377 5.377 11 Si 0.751 3.249 12 H -0.179 1.179 13 H -0.193 1.193 14 H -0.193 1.193 15 O -0.087 6.087 16 N -0.201 5.201 17 H 0.072 0.928 18 H 0.073 0.927 19 H 0.077 0.923 20 H 0.090 0.910 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.132 0.868 25 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.680 3.713 -1.599 4.378 hybrid contribution 0.137 0.777 1.239 1.469 sum -1.544 4.490 -0.359 4.762 Atomic orbital electron populations 1.21734 0.94493 1.01861 1.01316 1.19446 0.95409 0.95076 0.93949 1.21744 1.01202 0.95141 1.01236 1.22271 0.94328 0.93029 0.95138 1.21627 1.33752 1.00922 0.92604 1.20219 0.86394 0.84358 0.91790 1.19071 1.37867 0.98003 0.91206 0.87648 1.26334 0.92932 0.94315 1.02224 1.69711 1.28252 1.01061 1.38692 0.85913 0.78989 0.80155 0.79800 1.17891 1.19337 1.19345 1.89343 1.72376 1.30054 1.16947 1.79904 1.30092 1.14935 0.95215 0.92814 0.92728 0.92321 0.90954 0.92673 0.93069 0.92108 0.86817 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.18 37.16 0.34 -1.92 15 2 C -0.02 -0.37 3.38 -91.77 -0.31 -0.68 15 3 C -0.14 -2.20 8.78 37.16 0.33 -1.87 15 4 C 0.11 2.88 6.10 -82.59 -0.50 2.37 15 5 C -0.46 -12.12 10.02 -38.62 -0.39 -12.50 15 6 C 0.23 6.75 6.88 -38.52 -0.27 6.49 15 7 C -0.43 -11.56 9.35 -38.12 -0.36 -11.92 15 8 H 0.11 2.59 7.85 -52.49 -0.41 2.18 15 9 C 0.07 1.67 5.50 -17.26 -0.09 1.58 15 10 N -0.75 -20.15 12.03 55.57 0.67 -19.49 15 11 Si 0.93 17.96 29.56 -169.99 -5.03 12.94 15 12 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 13 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 14 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 15 O -0.08 -2.53 10.49 6.71 0.07 -2.46 15 16 N -0.44 -12.75 12.91 33.59 0.43 -12.32 15 17 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 18 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 19 H 0.06 0.98 8.14 -51.92 -0.42 0.56 15 20 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 21 H 0.05 0.92 8.14 -51.92 -0.42 0.50 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.06 0.99 7.29 -51.93 -0.38 0.61 15 24 H 0.11 2.75 7.41 -52.49 -0.39 2.36 15 25 H 0.29 6.84 8.29 -40.82 -0.34 6.51 15 LS Contribution 225.19 15.07 3.39 3.39 Total: -1.00 -30.85 225.19 -4.56 -35.41 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -2.85 Total: 0.97 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -1.25 Total: -18.45 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 1.10 Total: -31.81 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: 0.07 Total: -2.46 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.85 -4.56 -35.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039123949.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.095 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds