Wall clock time and date at job start Mon Mar 30 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47231 * 85.02721 * 3 2 1 5 5 H 1.48504 * 109.47218 * 205.02771 * 3 2 1 6 6 H 1.48502 * 109.47272 * 325.02719 * 3 2 1 7 7 C 1.40062 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99967 * 189.48568 * 7 2 1 9 9 C 1.39954 * 120.00041 * 9.48930 * 7 2 1 10 10 C 1.39738 * 126.35567 * 12.14680 * 9 7 2 11 11 C 1.39299 * 107.05451 * 179.84588 * 10 9 7 12 12 C 1.35970 * 108.08815 * 0.41943 * 11 10 9 13 13 N 1.36160 * 109.05312 * 359.73731 * 12 11 10 14 14 C 1.46509 * 125.74454 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47034 * 265.02302 * 14 13 12 16 16 O 1.42899 * 109.46846 * 179.97438 * 15 14 13 17 17 H 0.97000 * 120.00512 * 0.02562 * 1 2 3 18 18 H 1.08002 * 126.47232 * 359.97438 * 10 9 7 19 19 H 1.07995 * 125.95681 * 180.13848 * 11 10 9 20 20 H 1.08006 * 125.47627 * 179.76570 * 12 11 10 21 21 H 1.09000 * 109.46506 * 25.02704 * 14 13 12 22 22 H 1.09000 * 109.46883 * 145.02684 * 14 13 12 23 23 H 1.08996 * 109.47181 * 300.00268 * 15 14 13 24 24 H 1.09000 * 109.46974 * 60.00437 * 15 14 13 25 25 H 0.96702 * 114.00026 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3849 2.1071 1.3948 5 1 3.5887 1.4122 -0.5923 6 1 1.4965 2.6201 -0.8025 7 6 2.0089 -1.2130 -0.0005 8 1 3.0779 -1.2194 0.1536 9 6 1.3236 -2.4166 -0.2009 10 6 0.0054 -2.5556 -0.6435 11 6 -0.2639 -3.9210 -0.7025 12 6 0.8500 -4.5888 -0.3001 13 7 1.8223 -3.6866 0.0077 14 6 3.1706 -4.0095 0.4812 15 6 3.1998 -3.9596 2.0101 16 8 4.5148 -4.2752 2.4719 17 1 -0.4851 0.8400 -0.0004 18 1 -0.6752 -1.7555 -0.8945 19 1 -1.1965 -4.3707 -1.0096 20 1 0.9481 -5.6625 -0.2354 21 1 3.4439 -5.0097 0.1449 22 1 3.8796 -3.2850 0.0805 23 1 2.9264 -2.9595 2.3463 24 1 2.4908 -4.6841 2.4108 25 1 4.6073 -4.2621 3.4344 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039291780.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:34 Heat of formation + Delta-G solvation = -11.735694 kcal Electronic energy + Delta-G solvation = -10685.876525 eV Core-core repulsion = 8665.034234 eV Total energy + Delta-G solvation = -2020.842291 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.15686 -36.52550 -33.40083 -31.85227 -28.35793 -26.98436 -24.21377 -22.21679 -19.18099 -18.55912 -17.43586 -16.22660 -15.22978 -14.75441 -14.33978 -14.17010 -12.73781 -12.12181 -12.06038 -11.73215 -11.39565 -11.23328 -10.96329 -10.68869 -10.38979 -10.07637 -9.64843 -9.55344 -9.10884 -7.08765 -6.66821 -6.48110 -4.05137 3.03072 3.15449 3.20136 3.74341 4.02007 4.19144 4.65683 5.05442 5.39715 5.50005 5.70248 5.86526 6.22609 6.34851 6.48219 6.95556 7.28409 7.38543 7.80816 7.84297 8.05093 8.30755 8.42133 8.92682 9.09583 9.27887 9.43369 10.47670 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.034502 B = 0.016590 C = 0.011819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.355569 B = 1687.311780 C = 2368.470278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.277 1.277 7 C -0.460 4.460 8 H 0.067 0.933 9 C 0.217 3.783 10 C -0.288 4.288 11 C -0.175 4.175 12 C -0.137 4.137 13 N -0.479 5.479 14 C 0.129 3.871 15 C 0.061 3.939 16 O -0.578 6.578 17 H 0.274 0.726 18 H 0.139 0.861 19 H 0.100 0.900 20 H 0.123 0.877 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 -2.619 3.198 5.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.140 4.140 3 Si 0.739 3.261 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.202 1.202 7 C -0.496 4.496 8 H 0.086 0.914 9 C 0.109 3.891 10 C -0.310 4.310 11 C -0.201 4.201 12 C -0.259 4.259 13 N -0.166 5.166 14 C 0.005 3.995 15 C -0.017 4.017 16 O -0.382 6.382 17 H 0.084 0.916 18 H 0.157 0.843 19 H 0.118 0.882 20 H 0.141 0.859 21 H 0.090 0.910 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.541 -2.655 2.652 5.891 hybrid contribution 0.189 0.697 0.684 0.995 sum 4.731 -1.958 3.336 6.111 Atomic orbital electron populations 1.69857 1.07152 1.28021 1.37842 1.25585 0.94741 1.00398 0.93306 0.86225 0.80247 0.81002 0.78661 1.19946 1.18883 1.20213 1.18373 0.94594 0.89294 1.47291 0.91432 1.18163 0.92616 0.81913 0.96458 1.21313 0.97448 0.94069 1.18217 1.20477 0.96262 0.95450 1.07912 1.20919 0.90994 0.92759 1.21248 1.43852 1.09577 1.06849 1.56278 1.20962 0.84838 1.01368 0.92301 1.22612 0.82946 1.00112 0.96068 1.86367 1.31391 1.93702 1.26766 0.91557 0.84310 0.88150 0.85924 0.91026 0.90089 0.92221 0.93766 0.77684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.82 10.63 55.56 0.59 -21.23 15 2 C 0.08 2.00 5.44 -17.28 -0.09 1.90 15 3 Si 0.91 19.57 29.57 -169.99 -5.03 14.55 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 7 C -0.46 -12.66 8.99 -38.26 -0.34 -13.00 15 8 H 0.07 1.78 7.23 -52.49 -0.38 1.40 15 9 C 0.22 6.07 6.62 -83.87 -0.56 5.51 15 10 C -0.29 -8.20 9.72 -38.63 -0.38 -8.58 15 11 C -0.18 -4.48 10.79 -40.00 -0.43 -4.91 15 12 C -0.14 -3.29 11.41 -16.44 -0.19 -3.48 15 13 N -0.48 -11.81 2.79 -114.07 -0.32 -12.13 15 14 C 0.13 2.65 6.20 -4.04 -0.03 2.62 15 15 C 0.06 1.12 7.37 37.16 0.27 1.39 15 16 O -0.58 -9.11 13.66 -35.23 -0.48 -9.59 15 17 H 0.27 6.79 8.30 -40.82 -0.34 6.45 15 18 H 0.14 4.12 6.16 -52.49 -0.32 3.80 15 19 H 0.10 2.30 8.06 -52.49 -0.42 1.87 15 20 H 0.12 2.55 8.06 -52.48 -0.42 2.13 15 21 H 0.07 1.32 8.13 -51.93 -0.42 0.90 15 22 H 0.08 1.68 7.48 -51.93 -0.39 1.30 15 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.38 3.98 9.12 45.56 0.42 4.39 15 LS Contribution 223.33 15.07 3.37 3.37 Total: -1.00 -30.66 223.33 -5.53 -36.19 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -1.92 Total: 7.38 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -1.74 Total: -18.54 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.27 Total: -33.35 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.48 Total: -9.59 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -30.66 -5.53 -36.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039291780.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.454 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds