Wall clock time and date at job start Mon Mar 30 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31543 * 119.85194 * 2 1 4 4 C 1.32282 * 121.80369 * 179.97438 * 3 2 1 5 5 F 1.35103 * 119.36961 * 179.97438 * 4 3 2 6 6 C 1.39002 * 121.26376 * 359.97438 * 4 3 2 7 7 C 1.36854 * 119.53323 * 0.06287 * 6 4 3 8 8 C 1.40721 * 119.84067 * 180.02562 * 2 1 3 9 9 C 1.41349 * 120.62892 * 359.72036 * 8 2 1 10 10 H 1.07999 * 119.99900 * 334.94618 * 9 8 2 11 11 C 1.39916 * 119.99713 * 154.94012 * 9 8 2 12 12 N 1.30849 * 120.00364 * 344.34083 * 11 9 8 13 13 Si 1.86800 * 119.99726 * 164.34255 * 11 9 8 14 14 H 1.48504 * 109.47365 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47251 * 120.00267 * 13 11 9 16 16 H 1.48505 * 109.47083 * 239.99635 * 13 11 9 17 17 H 1.08998 * 109.46929 * 269.97625 * 1 2 3 18 18 H 1.09004 * 109.47117 * 29.97988 * 1 2 3 19 19 H 1.09005 * 109.47317 * 149.97664 * 1 2 3 20 20 H 1.08004 * 120.23009 * 179.97438 * 6 4 3 21 21 H 1.08002 * 120.82414 * 179.97438 * 7 6 4 22 22 H 0.97003 * 120.00107 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1618 1.1409 0.0000 4 6 3.4838 1.1859 0.0005 5 9 4.1059 2.3852 0.0000 6 6 4.2453 0.0230 0.0016 7 6 3.6186 -1.1936 0.0008 8 6 2.2072 -1.2206 -0.0005 9 6 1.5105 -2.4505 0.0048 10 1 0.5088 -2.5019 0.4053 11 6 2.1187 -3.6012 -0.5087 12 7 3.1839 -3.4978 -1.2616 13 14 1.4098 -5.2851 -0.1196 14 1 0.2129 -5.1304 0.7458 15 1 1.0236 -5.9636 -1.3828 16 1 2.4298 -6.1001 0.5881 17 1 -0.3633 -0.0004 1.0277 18 1 -0.3633 0.8902 -0.5135 19 1 -0.3634 -0.8898 -0.5142 20 1 5.3238 0.0793 0.0016 21 1 4.1897 -2.1103 0.0012 22 1 3.6052 -4.2956 -1.6179 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370922.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:54 Heat of formation + Delta-G solvation = -47.588544 kcal Electronic energy + Delta-G solvation = -10359.521963 eV Core-core repulsion = 8213.664671 eV Total energy + Delta-G solvation = -2145.857292 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.41765 -40.31308 -35.99268 -33.48314 -32.50360 -28.85473 -26.86218 -23.57155 -22.64518 -19.38014 -18.33446 -17.49038 -16.88446 -16.54647 -15.61193 -14.67603 -14.53459 -14.34472 -13.90319 -13.60331 -13.25381 -12.86309 -12.70633 -12.64527 -12.21570 -11.71257 -11.24161 -10.39232 -10.18620 -9.42399 -8.77238 -6.47608 0.53543 0.85192 1.43731 1.50287 1.59931 2.18421 2.58794 3.26932 3.47755 4.12137 4.44448 4.49800 4.85724 4.96213 4.98326 5.10315 5.19883 5.43294 5.64570 5.77156 5.95226 6.39861 6.65806 6.66830 7.38270 8.17830 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.063428 B = 0.013673 C = 0.011580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.341662 B = 2047.288945 C = 2417.421219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.010 3.990 3 N -0.507 5.507 4 C 0.120 3.880 5 F -0.149 7.149 6 C -0.161 4.161 7 C -0.136 4.136 8 C 0.034 3.966 9 C -0.452 4.452 10 H 0.102 0.898 11 C 0.034 3.966 12 N -0.812 5.812 13 Si 0.992 3.008 14 H -0.250 1.250 15 H -0.266 1.266 16 H -0.265 1.265 17 H 0.070 0.930 18 H 0.061 0.939 19 H 0.078 0.922 20 H 0.135 0.865 21 H 0.132 0.868 22 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 -3.798 1.527 4.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.132 4.132 3 N -0.221 5.221 4 C -0.033 4.033 5 F -0.129 7.129 6 C -0.182 4.182 7 C -0.161 4.161 8 C 0.030 3.970 9 C -0.480 4.480 10 H 0.120 0.880 11 C -0.184 4.184 12 N -0.437 5.437 13 Si 0.812 3.188 14 H -0.173 1.173 15 H -0.191 1.191 16 H -0.190 1.190 17 H 0.088 0.912 18 H 0.080 0.920 19 H 0.097 0.903 20 H 0.153 0.847 21 H 0.150 0.850 22 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.309 -3.092 1.375 4.097 hybrid contribution 0.814 -0.872 -0.075 1.195 sum -1.495 -3.964 1.300 4.431 Atomic orbital electron populations 1.20325 0.87657 1.02323 1.02070 1.21435 0.97063 0.86354 1.08398 1.66151 1.08717 1.33208 1.14010 1.17799 0.87917 0.80312 1.17273 1.91375 1.81081 1.44947 1.95538 1.21264 1.00531 0.91958 1.04443 1.21404 0.95094 0.96392 1.03203 1.18783 0.92971 0.94360 0.90923 1.19994 1.02531 0.91820 1.33626 0.88003 1.26968 0.94306 1.05586 0.91498 1.69823 1.18017 1.34082 1.21736 0.84984 0.79552 0.74966 0.79310 1.17312 1.19099 1.19015 0.91184 0.92045 0.90292 0.84700 0.85015 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.65 9.58 71.24 0.68 -1.96 14 2 C 0.01 0.51 6.86 43.21 0.30 0.81 14 3 N -0.51 -26.52 10.28 -182.67 -1.88 -28.40 14 4 C 0.12 6.13 8.41 84.81 0.71 6.84 14 5 F -0.15 -7.23 17.28 44.97 0.78 -6.45 14 6 C -0.16 -7.76 10.01 22.13 0.22 -7.54 14 7 C -0.14 -6.88 8.75 22.66 0.20 -6.68 14 8 C 0.03 1.77 5.58 -21.19 -0.12 1.65 14 9 C -0.45 -21.51 8.15 23.44 0.19 -21.32 14 10 H 0.10 4.47 6.87 -2.91 -0.02 4.45 14 11 C 0.03 1.51 5.20 85.25 0.44 1.96 14 12 N -0.81 -38.25 10.92 21.82 0.24 -38.01 14 13 Si 0.99 33.34 29.59 68.60 2.03 35.37 14 14 H -0.25 -8.08 7.11 99.48 0.71 -7.37 14 15 H -0.27 -8.68 7.11 99.48 0.71 -7.98 14 16 H -0.27 -8.70 7.11 99.48 0.71 -7.99 14 17 H 0.07 2.51 8.14 -2.39 -0.02 2.49 14 18 H 0.06 2.29 8.14 -2.38 -0.02 2.27 14 19 H 0.08 2.98 6.78 -2.38 -0.02 2.97 14 20 H 0.14 5.63 8.06 -2.91 -0.02 5.61 14 21 H 0.13 6.64 6.24 -2.91 -0.02 6.62 14 22 H 0.30 12.43 8.30 -92.71 -0.77 11.66 14 Total: -1.00 -56.05 204.46 5.03 -51.02 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.24 Total: 12.73 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 2.63 Total: -26.26 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -1.64 Total: -66.41 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.78 Total: -6.45 kcal Atomic # 14 Polarization: 33.34 SS G_CDS: 2.03 Total: 35.37 kcal Total: -56.05 5.03 -51.02 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370922.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.431 kcal (2) G-P(sol) polarization free energy of solvation -56.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds