Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38624 * 119.31613 * 2 1 4 4 C 1.38024 * 119.49145 * 179.76821 * 3 2 1 5 5 C 1.41053 * 118.22989 * 0.49626 * 4 3 2 6 6 C 1.41282 * 120.67542 * 179.72601 * 5 4 3 7 7 H 1.07996 * 119.99868 * 203.56786 * 6 5 4 8 8 C 1.39943 * 119.99916 * 23.57179 * 6 5 4 9 9 N 1.30839 * 120.00161 * 17.43463 * 8 6 5 10 10 Si 1.86800 * 119.99945 * 197.43340 * 8 6 5 11 11 H 1.48500 * 109.47065 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47292 * 120.00297 * 10 8 6 13 13 H 1.48502 * 109.47010 * 239.99934 * 10 8 6 14 14 C 1.41088 * 118.64504 * 359.75128 * 5 4 3 15 15 F 1.35103 * 119.83540 * 179.97438 * 14 5 4 16 16 N 1.31731 * 120.32606 * 359.97438 * 14 5 4 17 17 H 1.08997 * 109.47118 * 269.72539 * 1 2 3 18 18 H 1.09008 * 109.46896 * 29.72274 * 1 2 3 19 19 H 1.09000 * 109.46733 * 149.72142 * 1 2 3 20 20 H 1.07993 * 120.25065 * 0.02562 * 3 2 1 21 21 H 1.07997 * 120.87914 * 180.22506 * 4 3 2 22 22 H 0.97002 * 120.00437 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2087 0.0000 4 6 3.5660 1.2129 0.0049 5 6 4.2370 -0.0277 -0.0011 6 6 5.6487 -0.0837 -0.0023 7 1 6.1541 -0.9600 -0.3805 8 6 6.3922 0.9964 0.4866 9 7 5.8189 1.8955 1.2448 10 14 8.2032 1.1546 0.0566 11 1 8.6076 0.0176 -0.8087 12 1 8.4306 2.4317 -0.6665 13 1 9.0108 1.1409 1.3027 14 6 3.4697 -1.2117 -0.0063 15 9 4.0876 -2.4131 -0.0126 16 7 2.1537 -1.1514 -0.0051 17 1 -0.3633 -0.0049 1.0276 18 1 -0.3633 0.8925 -0.5096 19 1 -0.3633 -0.8875 -0.5182 20 1 1.6387 2.1398 0.0004 21 1 4.1174 2.1415 0.0086 22 1 6.3343 2.6440 1.5840 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044371473.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = -49.272250 kcal Electronic energy + Delta-G solvation = -10358.507726 eV Core-core repulsion = 8212.577424 eV Total energy + Delta-G solvation = -2145.930303 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.33737 -40.21392 -36.27529 -33.01539 -32.46699 -29.64966 -26.19649 -23.62016 -22.83944 -19.43553 -18.15844 -17.74769 -16.71579 -16.47367 -15.75602 -14.71211 -14.50727 -14.30986 -13.93448 -13.50005 -13.31511 -12.97799 -12.68431 -12.62035 -12.27886 -11.85770 -11.27794 -10.35093 -10.17965 -9.46692 -8.82467 -6.54950 0.53729 0.82258 1.36900 1.45532 1.53466 2.15287 2.55127 3.25055 3.41805 4.27233 4.34947 4.54395 4.80482 4.96849 4.98827 5.09223 5.23185 5.27493 5.62926 5.79134 5.90378 6.33975 6.56336 6.64070 7.36234 8.12182 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.061587 B = 0.014061 C = 0.011796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.535323 B = 1990.897161 C = 2373.171235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.007 3.993 3 C -0.146 4.146 4 C -0.134 4.134 5 C 0.022 3.978 6 C -0.475 4.475 7 H 0.078 0.922 8 C 0.039 3.961 9 N -0.807 5.807 10 Si 0.993 3.007 11 H -0.261 1.261 12 H -0.254 1.254 13 H -0.261 1.261 14 C 0.124 3.876 15 F -0.148 7.148 16 N -0.511 5.511 17 H 0.070 0.930 18 H 0.091 0.909 19 H 0.060 0.940 20 H 0.149 0.851 21 H 0.134 0.866 22 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 3.631 -1.457 4.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.133 4.133 3 C -0.166 4.166 4 C -0.160 4.160 5 C 0.017 3.983 6 C -0.503 4.503 7 H 0.096 0.904 8 C -0.178 4.178 9 N -0.431 5.431 10 Si 0.812 3.188 11 H -0.185 1.185 12 H -0.178 1.178 13 H -0.185 1.185 14 C -0.031 4.031 15 F -0.128 7.128 16 N -0.225 5.225 17 H 0.089 0.911 18 H 0.109 0.891 19 H 0.079 0.921 20 H 0.167 0.833 21 H 0.151 0.849 22 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.615 3.032 -1.309 3.676 hybrid contribution 1.376 0.292 0.027 1.407 sum -0.239 3.324 -1.282 3.571 Atomic orbital electron populations 1.20426 0.86798 1.03067 1.02487 1.21008 0.97432 0.86606 1.08219 1.21908 0.94486 0.98981 1.01203 1.21697 0.93715 0.97431 1.03140 1.18589 0.95341 0.91109 0.93291 1.19781 0.90916 1.03285 1.36313 0.90385 1.26850 1.06465 0.93180 0.91325 1.69781 1.41244 1.10604 1.21517 0.84994 0.74508 0.79829 0.79472 1.18517 1.17754 1.18523 1.18486 0.87695 0.80449 1.16448 1.91327 1.81768 1.44546 1.95182 1.66126 1.08877 1.33122 1.14390 0.91132 0.89055 0.92060 0.83348 0.84871 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.16 71.24 0.72 -1.55 14 2 C 0.01 0.31 6.79 42.62 0.29 0.60 14 3 C -0.15 -6.38 9.70 22.31 0.22 -6.17 14 4 C -0.13 -6.76 8.81 22.91 0.20 -6.56 14 5 C 0.02 1.24 5.60 -21.14 -0.12 1.13 14 6 C -0.47 -25.79 8.81 23.43 0.21 -25.59 14 7 H 0.08 4.24 7.73 -2.91 -0.02 4.22 14 8 C 0.04 1.90 5.18 85.25 0.44 2.35 14 9 N -0.81 -39.39 10.92 21.83 0.24 -39.16 14 10 Si 0.99 36.27 29.59 68.60 2.03 38.30 14 11 H -0.26 -9.66 7.11 99.48 0.71 -8.95 14 12 H -0.25 -8.60 7.11 99.48 0.71 -7.89 14 13 H -0.26 -9.05 7.11 99.48 0.71 -8.35 14 14 C 0.12 7.00 8.45 85.41 0.72 7.72 14 15 F -0.15 -8.30 16.74 44.97 0.75 -7.55 14 16 N -0.51 -26.75 10.25 -182.64 -1.87 -28.62 14 17 H 0.07 2.07 8.14 -2.39 -0.02 2.05 14 18 H 0.09 2.33 8.07 -2.38 -0.02 2.31 14 19 H 0.06 1.94 8.14 -2.39 -0.02 1.92 14 20 H 0.15 5.15 8.06 -2.91 -0.02 5.13 14 21 H 0.13 6.68 6.19 -2.91 -0.02 6.66 14 22 H 0.30 12.80 8.30 -92.71 -0.77 12.03 14 Total: -1.00 -61.03 206.96 5.06 -55.96 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.23 Total: 9.13 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 2.68 Total: -28.06 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -1.63 Total: -67.78 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.75 Total: -7.55 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -61.03 5.06 -55.96 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044371473.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.692 kcal (2) G-P(sol) polarization free energy of solvation -61.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds