Wall clock time and date at job start Mon Mar 30 2020 01:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31235 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48503 * 109.47485 * 240.00043 * 3 2 1 5 5 H 1.48504 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47281 * 119.99762 * 3 2 1 7 7 C 1.39108 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00383 * 189.63575 * 7 2 1 9 9 N 1.37137 * 119.99706 * 9.62886 * 7 2 1 10 10 C 1.36073 * 125.73590 * 22.00026 * 9 7 2 11 11 C 1.35445 * 108.87437 * 179.97438 * 10 9 7 12 12 C 1.39992 * 107.97941 * 0.26107 * 11 10 9 13 13 C 1.38106 * 125.73757 * 201.94964 * 9 7 2 14 14 C 1.46288 * 126.26407 * 0.04014 * 13 9 7 15 15 O 1.21649 * 119.99948 * 179.97438 * 14 13 9 16 16 O 1.34923 * 120.00247 * 359.97438 * 14 13 9 17 17 H 0.96996 * 120.00049 * 0.02562 * 1 2 3 18 18 H 1.08000 * 125.56011 * 359.95734 * 10 9 7 19 19 H 1.07995 * 126.01216 * 180.02562 * 11 10 9 20 20 H 1.07992 * 126.42486 * 179.71760 * 12 11 10 21 21 H 0.96697 * 113.99829 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 3.1002 1.6964 -1.2125 5 1 1.2814 2.7465 -0.0006 6 1 3.1001 1.6964 1.2126 7 6 2.0080 -1.2047 0.0005 8 1 3.0765 -1.2112 0.1571 9 7 1.3368 -2.3840 -0.1976 10 6 0.1271 -2.5175 -0.8062 11 6 -0.2151 -3.8279 -0.8184 12 6 0.8089 -4.5478 -0.1915 13 6 1.7754 -3.6361 0.1862 14 6 3.0306 -3.9403 0.8732 15 8 3.3041 -5.0905 1.1594 16 8 3.8850 -2.9450 1.1894 17 1 -0.4850 0.8400 -0.0004 18 1 -0.4638 -1.7101 -1.2130 19 1 -1.1207 -4.2439 -1.2347 20 1 0.8389 -5.6159 -0.0351 21 1 4.6861 -3.2432 1.6414 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048547317.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:51 Heat of formation + Delta-G solvation = -55.444272 kcal Electronic energy + Delta-G solvation = -10576.605248 eV Core-core repulsion = 8418.034516 eV Total energy + Delta-G solvation = -2158.570731 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.99428 -38.51915 -35.17014 -33.61343 -30.32247 -28.06653 -25.04305 -22.65090 -19.92305 -18.80411 -18.10540 -16.85157 -15.67764 -14.84379 -14.69088 -14.03936 -12.92836 -12.75013 -12.49038 -11.81861 -11.58234 -11.29228 -10.81765 -10.76408 -10.66271 -10.45814 -9.79005 -9.40327 -7.86344 -6.99484 -6.77082 -4.51957 2.43501 2.98016 2.99299 3.01859 3.74409 3.99817 4.15290 4.36824 4.87314 4.98667 6.38301 6.53772 6.75377 6.93309 7.05437 7.17420 7.38489 7.46316 7.80889 8.22483 8.38956 8.72502 9.02189 9.35300 10.12220 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.045322 B = 0.017734 C = 0.013020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.659543 B = 1578.541293 C = 2150.005514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.044 3.956 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.333 4.333 8 H 0.125 0.875 9 N -0.208 5.208 10 C 0.008 3.992 11 C -0.250 4.250 12 C -0.148 4.148 13 C -0.132 4.132 14 C 0.556 3.444 15 O -0.554 6.554 16 O -0.501 6.501 17 H 0.284 0.716 18 H 0.167 0.833 19 H 0.120 0.880 20 H 0.123 0.877 21 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 1.440 -0.330 3.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.168 4.168 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.462 4.462 8 H 0.143 0.857 9 N 0.135 4.865 10 C -0.137 4.137 11 C -0.272 4.272 12 C -0.175 4.175 13 C -0.244 4.244 14 C 0.407 3.593 15 O -0.447 6.447 16 O -0.309 6.309 17 H 0.094 0.906 18 H 0.185 0.815 19 H 0.138 0.862 20 H 0.141 0.859 21 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.471 1.749 -0.362 3.049 hybrid contribution 0.706 0.584 0.394 0.997 sum 3.177 2.333 0.032 3.942 Atomic orbital electron populations 1.69846 1.06627 1.29537 1.40168 1.25720 0.95731 1.01066 0.94235 0.85688 0.79066 0.78451 0.79870 1.18896 1.20142 1.18916 1.20430 0.94735 0.81592 1.49425 0.85733 1.40334 1.12853 1.04141 1.29134 1.22063 0.90458 0.97143 1.04066 1.20487 1.01056 0.93453 1.12209 1.20679 0.94136 0.97009 1.05688 1.19063 0.97891 0.87165 1.20260 1.19676 0.82473 0.82035 0.75165 1.90810 1.76629 1.21833 1.55438 1.85284 1.33050 1.39758 1.72780 0.90553 0.81549 0.86201 0.85931 0.75674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.07 10.92 55.50 0.61 -20.47 14 2 C 0.04 1.08 5.37 -17.48 -0.09 0.98 14 3 Si 0.95 18.57 29.56 -169.99 -5.03 13.55 14 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 14 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 14 7 C -0.33 -8.71 9.45 -14.86 -0.14 -8.85 14 8 H 0.13 3.14 6.03 -52.49 -0.32 2.82 14 9 N -0.21 -5.58 2.90 -58.20 -0.17 -5.75 14 10 C 0.01 0.21 9.99 -16.67 -0.17 0.04 14 11 C -0.25 -5.93 10.81 -39.92 -0.43 -6.36 14 12 C -0.15 -3.62 10.66 -38.97 -0.42 -4.03 14 13 C -0.13 -3.42 6.85 -81.84 -0.56 -3.98 14 14 C 0.56 13.26 8.25 33.97 0.28 13.54 14 15 O -0.55 -13.61 17.62 -19.38 -0.34 -13.95 14 16 O -0.50 -10.21 11.08 -41.10 -0.46 -10.67 14 17 H 0.28 6.57 8.30 -40.82 -0.34 6.23 14 18 H 0.17 4.25 6.44 -52.49 -0.34 3.91 14 19 H 0.12 2.45 8.06 -52.49 -0.42 2.03 14 20 H 0.12 2.75 8.06 -52.49 -0.42 2.33 14 21 H 0.39 5.59 8.98 45.56 0.41 5.99 14 LS Contribution 200.65 15.07 3.02 3.02 Total: -1.00 -29.79 200.65 -4.11 -33.90 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -0.23 Total: 9.00 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.53 Total: -8.65 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.44 Total: -26.22 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.80 Total: -24.61 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -29.79 -4.11 -33.90 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048547317.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.541 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds