Wall clock time and date at job start Mon Mar 30 2020 01:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31235 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48503 * 109.47485 * 240.00043 * 3 2 1 5 5 H 1.48504 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47281 * 119.99762 * 3 2 1 7 7 C 1.39108 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00383 * 189.63575 * 7 2 1 9 9 N 1.37137 * 119.99706 * 9.62886 * 7 2 1 10 10 C 1.36073 * 125.73590 * 22.00026 * 9 7 2 11 11 C 1.35445 * 108.87437 * 179.97438 * 10 9 7 12 12 C 1.39992 * 107.97941 * 0.26107 * 11 10 9 13 13 C 1.38106 * 125.73757 * 201.94964 * 9 7 2 14 14 C 1.46288 * 126.26407 * 0.04014 * 13 9 7 15 15 O 1.21649 * 119.99948 * 179.97438 * 14 13 9 16 16 O 1.34923 * 120.00247 * 359.97438 * 14 13 9 17 17 H 0.96996 * 120.00049 * 0.02562 * 1 2 3 18 18 H 1.08000 * 125.56011 * 359.95734 * 10 9 7 19 19 H 1.07995 * 126.01216 * 180.02562 * 11 10 9 20 20 H 1.07992 * 126.42486 * 179.71760 * 12 11 10 21 21 H 0.96697 * 113.99829 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 3.1002 1.6964 -1.2125 5 1 1.2814 2.7465 -0.0006 6 1 3.1001 1.6964 1.2126 7 6 2.0080 -1.2047 0.0005 8 1 3.0765 -1.2112 0.1571 9 7 1.3368 -2.3840 -0.1976 10 6 0.1271 -2.5175 -0.8062 11 6 -0.2151 -3.8279 -0.8184 12 6 0.8089 -4.5478 -0.1915 13 6 1.7754 -3.6361 0.1862 14 6 3.0306 -3.9403 0.8732 15 8 3.3041 -5.0905 1.1594 16 8 3.8850 -2.9450 1.1894 17 1 -0.4850 0.8400 -0.0004 18 1 -0.4638 -1.7101 -1.2130 19 1 -1.1207 -4.2439 -1.2347 20 1 0.8389 -5.6159 -0.0351 21 1 4.6861 -3.2432 1.6414 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048547317.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:51 Heat of formation + Delta-G solvation = -74.750066 kcal Electronic energy + Delta-G solvation = -10577.442410 eV Core-core repulsion = 8418.034516 eV Total energy + Delta-G solvation = -2159.407893 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.87883 -40.34565 -36.93749 -35.49389 -32.24162 -29.96890 -26.96137 -24.50246 -21.82056 -20.70229 -19.95381 -18.64354 -17.59113 -16.61818 -16.44220 -15.85967 -14.81007 -14.54184 -14.33124 -13.61478 -13.40566 -12.95639 -12.63806 -12.53381 -12.37635 -12.12189 -11.64937 -11.20388 -9.78203 -8.89870 -8.66503 -6.47622 0.56554 1.38082 1.44021 1.53063 2.07650 2.16714 2.45058 2.47495 2.96815 3.11538 4.60849 4.70261 4.85224 5.05330 5.17376 5.45753 5.54287 5.62744 5.89108 6.36121 6.48831 6.90736 7.20717 7.42092 8.28907 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.045322 B = 0.017734 C = 0.013020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.659543 B = 1578.541293 C = 2150.005514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.006 3.994 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.367 4.367 8 H 0.128 0.872 9 N -0.221 5.221 10 C -0.017 4.017 11 C -0.243 4.243 12 C -0.158 4.158 13 C -0.164 4.164 14 C 0.560 3.440 15 O -0.566 6.566 16 O -0.496 6.496 17 H 0.292 0.708 18 H 0.162 0.838 19 H 0.152 0.848 20 H 0.140 0.860 21 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 2.233 -0.247 3.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.203 4.203 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.495 4.495 8 H 0.145 0.855 9 N 0.122 4.878 10 C -0.162 4.162 11 C -0.265 4.265 12 C -0.185 4.185 13 C -0.276 4.276 14 C 0.411 3.589 15 O -0.461 6.461 16 O -0.307 6.307 17 H 0.102 0.898 18 H 0.179 0.821 19 H 0.169 0.831 20 H 0.157 0.843 21 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 3.006 2.526 -0.271 3.936 hybrid contribution 0.536 0.321 0.386 0.734 sum 3.542 2.847 0.115 4.546 Atomic orbital electron populations 1.69910 1.08060 1.30974 1.39914 1.26767 0.96568 1.04123 0.92834 0.84640 0.77846 0.73697 0.80137 1.18146 1.19119 1.18288 1.20826 0.95304 0.82249 1.51136 0.85469 1.40592 1.13230 1.04632 1.29347 1.22240 0.90810 0.97978 1.05140 1.20847 1.01837 0.92598 1.11193 1.21004 0.94082 0.97830 1.05586 1.19640 0.99360 0.87458 1.21161 1.19450 0.82430 0.82179 0.74838 1.90794 1.76979 1.22303 1.55997 1.85208 1.34032 1.38777 1.72719 0.89762 0.82057 0.83074 0.84268 0.72561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.18 10.92 21.68 0.24 -42.94 14 2 C 0.01 0.28 5.37 84.99 0.46 0.73 14 3 Si 1.02 36.78 29.56 68.60 2.03 38.80 14 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 5 H -0.27 -9.14 7.11 99.48 0.71 -8.44 14 6 H -0.26 -9.05 7.11 99.48 0.71 -8.35 14 7 C -0.37 -19.11 9.45 84.07 0.79 -18.32 14 8 H 0.13 6.34 6.03 -2.91 -0.02 6.32 14 9 N -0.22 -11.89 2.90 -338.03 -0.98 -12.87 14 10 C -0.02 -0.86 9.99 83.39 0.83 -0.03 14 11 C -0.24 -11.30 10.81 22.05 0.24 -11.06 14 12 C -0.16 -7.61 10.66 22.67 0.24 -7.36 14 13 C -0.16 -8.49 6.85 40.22 0.28 -8.21 14 14 C 0.56 26.30 8.25 69.91 0.58 26.87 14 15 O -0.57 -27.22 17.62 19.35 0.34 -26.88 14 16 O -0.50 -19.56 11.08 -58.38 -0.65 -20.20 14 17 H 0.29 13.30 8.30 -92.71 -0.77 12.53 14 18 H 0.16 8.34 6.44 -2.91 -0.02 8.32 14 19 H 0.15 5.88 8.06 -2.91 -0.02 5.86 14 20 H 0.14 6.08 8.06 -2.91 -0.02 6.06 14 21 H 0.42 11.05 8.98 -74.06 -0.67 10.39 14 Total: -1.00 -62.02 200.65 5.00 -57.02 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.60 Total: 24.45 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 3.42 Total: -17.38 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.74 Total: -55.81 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -0.31 Total: -47.08 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.80 kcal Total: -62.02 5.00 -57.02 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048547317.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.731 kcal (2) G-P(sol) polarization free energy of solvation -62.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds