Wall clock time and date at job start Mon Mar 30 2020 01:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.56950 * 112.02778 * 281.67455 * 10 9 7 12 12 C 1.57592 * 99.92183 * 297.44680 * 11 10 9 13 13 C 1.54580 * 104.48208 * 325.56980 * 12 11 10 14 14 C 1.55923 * 104.64290 * 0.44925 * 13 12 11 15 15 C 1.55929 * 105.23140 * 289.53116 * 14 13 12 16 16 C 1.54581 * 104.64297 * 70.46945 * 15 14 13 17 17 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 19 19 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 20 20 H 1.09007 * 111.70626 * 48.38128 * 10 9 7 21 21 H 1.08994 * 116.22498 * 62.87209 * 11 10 9 22 22 H 1.08995 * 110.10132 * 207.01951 * 12 11 10 23 23 H 1.09004 * 110.86330 * 84.49597 * 12 11 10 24 24 H 1.08996 * 110.40378 * 241.65743 * 13 12 11 25 25 H 1.08999 * 110.50116 * 119.29201 * 13 12 11 26 26 H 1.09004 * 115.91820 * 160.03484 * 14 13 12 27 27 H 1.09000 * 110.39936 * 189.26474 * 15 14 13 28 28 H 1.09000 * 110.39784 * 311.67871 * 15 14 13 29 29 H 1.08997 * 110.40101 * 241.20979 * 16 15 14 30 30 H 1.08997 * 110.49982 * 118.84222 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 2.8517 -3.9182 -1.4243 12 6 1.5414 -4.2997 -2.2124 13 6 0.6750 -5.0555 -1.1791 14 6 1.5262 -5.0513 0.1273 15 6 2.7160 -6.0186 -0.1558 16 6 3.5937 -5.2682 -1.1834 17 1 -0.4850 -0.8401 -0.0004 18 1 0.6241 -2.5566 0.8903 19 1 0.6247 -2.5571 -0.8897 20 1 3.0186 -3.5314 0.7577 21 1 3.4426 -3.1068 -1.8492 22 1 1.7854 -4.9504 -3.0521 23 1 1.0238 -3.4060 -2.5609 24 1 0.4932 -6.0777 -1.5108 25 1 -0.2692 -4.5352 -1.0191 26 1 0.9787 -5.2276 1.0533 27 1 3.2784 -6.2070 0.7587 28 1 2.3520 -6.9549 -0.5788 29 1 3.6613 -5.8356 -2.1116 30 1 4.5885 -5.0876 -0.7760 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075538517.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:52 Heat of formation + Delta-G solvation = -40.741116 kcal Electronic energy + Delta-G solvation = -11146.615955 eV Core-core repulsion = 9325.774900 eV Total energy + Delta-G solvation = -1820.841055 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.13863 -35.51721 -31.84026 -30.87141 -30.02241 -26.81302 -24.26442 -22.93138 -20.10922 -19.74796 -18.72013 -17.00039 -16.34037 -15.76188 -15.44912 -14.66475 -13.83196 -13.50515 -13.19791 -13.13843 -12.59057 -12.53620 -12.09745 -12.00044 -11.96151 -11.67686 -11.51280 -11.27458 -11.00112 -10.76153 -10.50920 -10.43571 -8.66118 -6.34514 1.49535 1.59259 1.76786 2.56307 3.17772 3.60267 3.68743 3.70100 4.31147 4.34518 4.40986 4.58451 4.64040 4.65784 4.66764 4.84649 4.92745 5.04738 5.09126 5.10590 5.22467 5.25971 5.36622 5.48231 5.49136 5.59332 5.69527 6.07499 6.22724 6.63565 7.46400 8.74279 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.065651 B = 0.011968 C = 0.011328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.392209 B = 2338.978027 C = 2471.100883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.117 2.883 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.607 4.607 8 H 0.045 0.955 9 C 0.021 3.979 10 C -0.082 4.082 11 C -0.098 4.098 12 C -0.113 4.113 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.108 4.108 16 C -0.110 4.110 17 H 0.253 0.747 18 H -0.027 1.027 19 H 0.003 0.997 20 H 0.049 0.951 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.033 0.967 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 -10.786 -2.633 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.239 4.239 3 Si 0.939 3.061 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.645 4.645 8 H 0.063 0.937 9 C -0.016 4.016 10 C -0.101 4.101 11 C -0.117 4.117 12 C -0.151 4.151 13 C -0.148 4.148 14 C -0.128 4.128 15 C -0.145 4.145 16 C -0.148 4.148 17 H 0.063 0.937 18 H -0.009 1.009 19 H 0.021 0.979 20 H 0.067 0.933 21 H 0.093 0.907 22 H 0.098 0.902 23 H 0.052 0.948 24 H 0.103 0.897 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.588 -9.185 -2.648 11.072 hybrid contribution -0.273 -1.259 0.191 1.303 sum 5.314 -10.444 -2.457 11.973 Atomic orbital electron populations 1.70888 1.07937 1.29680 1.49494 1.27398 0.96655 1.06798 0.93094 0.82938 0.74223 0.71210 0.77741 1.19887 1.19419 1.20794 1.22500 0.94354 0.93576 1.54033 0.93697 1.19100 0.94731 0.93979 0.93789 1.23082 0.96624 0.93661 0.96709 1.23721 0.95972 0.96782 0.95188 1.22800 0.95784 0.98704 0.97787 1.22503 0.97184 1.00138 0.95006 1.23644 0.96719 0.95127 0.97261 1.22529 0.95382 0.97575 0.99005 1.22536 0.98064 0.94536 0.99634 0.93715 1.00890 0.97898 0.93266 0.90699 0.90173 0.94781 0.89709 0.94355 0.89482 0.91492 0.89954 0.90214 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.54 13.65 21.45 0.29 -60.25 16 2 C -0.04 -2.58 5.46 84.65 0.46 -2.12 16 3 Si 1.12 52.16 29.90 68.60 2.05 54.21 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.61 -35.98 9.02 25.60 0.23 -35.75 16 8 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.02 1.13 3.53 29.85 0.11 1.23 16 10 C -0.08 -3.52 2.65 -8.02 -0.02 -3.54 16 11 C -0.10 -3.64 4.81 -6.77 -0.03 -3.67 16 12 C -0.11 -3.97 5.62 32.76 0.18 -3.79 16 13 C -0.11 -3.68 5.56 32.14 0.18 -3.50 16 14 C -0.11 -3.72 4.81 -7.38 -0.04 -3.76 16 15 C -0.11 -2.85 6.23 32.15 0.20 -2.65 16 16 C -0.11 -3.07 6.23 32.14 0.20 -2.87 16 17 H 0.25 16.56 7.22 -92.71 -0.67 15.89 16 18 H -0.03 -1.60 8.01 -2.39 -0.02 -1.62 16 19 H 0.00 0.16 5.30 -2.38 -0.01 0.15 16 20 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 21 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 22 H 0.08 2.29 7.91 -2.39 -0.02 2.27 16 23 H 0.03 1.39 7.10 -2.38 -0.02 1.37 16 24 H 0.08 2.24 7.87 -2.39 -0.02 2.22 16 25 H 0.04 1.42 7.67 -2.39 -0.02 1.40 16 26 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 1.79 7.87 -2.39 -0.02 1.77 16 29 H 0.08 1.86 7.91 -2.39 -0.02 1.84 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -66.67 234.13 5.01 -61.67 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.19 Total: 4.79 kcal Atomic # 6 Polarization: -61.89 SS G_CDS: 1.47 Total: -60.42 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.29 Total: -60.25 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.05 Total: 54.21 kcal Total: -66.67 5.01 -61.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538517.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.927 kcal (2) G-P(sol) polarization free energy of solvation -66.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds