Wall clock time and date at job start Mon Mar 30 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.51840 * 126.34137 * 2 1 4 4 C 1.55130 * 104.31682 * 156.13358 * 3 2 1 5 5 C 1.54982 * 102.22615 * 37.93287 * 4 3 2 6 6 H 1.09004 * 110.56815 * 81.30620 * 5 4 3 7 7 C 1.50704 * 110.56922 * 204.16606 * 5 4 3 8 8 H 1.07997 * 120.00007 * 49.14798 * 7 5 4 9 9 C 1.37879 * 119.99811 * 229.13718 * 7 5 4 10 10 N 1.31511 * 120.00237 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99527 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47103 * 90.00568 * 11 9 7 13 13 H 1.48504 * 109.47077 * 209.99992 * 11 9 7 14 14 H 1.48494 * 109.47523 * 330.00242 * 11 9 7 15 15 C 1.51457 * 126.34093 * 180.31252 * 2 1 3 16 16 C 1.53001 * 109.98005 * 299.68548 * 15 2 1 17 17 C 1.52991 * 109.98533 * 60.98548 * 15 2 1 18 18 H 1.08003 * 119.99761 * 179.68676 * 1 2 3 19 19 H 1.08000 * 120.00147 * 359.41503 * 1 2 3 20 20 H 1.08995 * 110.44261 * 274.96814 * 3 2 1 21 21 H 1.08992 * 110.44040 * 37.49548 * 3 2 1 22 22 H 1.09005 * 111.04224 * 279.69001 * 4 3 2 23 23 H 1.09002 * 110.73016 * 156.03796 * 4 3 2 24 24 H 0.97000 * 119.99794 * 179.97438 * 10 9 7 25 25 H 1.08990 * 109.47850 * 54.53628 * 16 15 2 26 26 H 1.09003 * 109.46777 * 174.54094 * 16 15 2 27 27 H 1.09000 * 109.47233 * 294.52982 * 16 15 2 28 28 H 1.09005 * 109.47091 * 58.54592 * 17 15 2 29 29 H 1.08999 * 109.47277 * 178.54514 * 17 15 2 30 30 H 1.08999 * 109.47539 * 298.55221 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.2097 1.2231 0.0000 4 6 3.5443 0.7175 0.6082 5 6 3.6618 -0.7052 0.0049 6 1 4.0600 -0.6597 -1.0088 7 6 4.5262 -1.5800 0.8759 8 1 4.3465 -1.6287 1.9397 9 6 5.5464 -2.3183 0.3146 10 7 5.7655 -2.2589 -0.9808 11 14 6.6174 -3.4032 1.3942 12 1 6.0188 -4.7594 1.4818 13 1 7.9772 -3.4995 0.8049 14 1 6.7079 -2.8132 2.7539 15 6 2.2075 -1.2200 -0.0067 16 6 1.9437 -2.0699 1.2379 17 6 1.9556 -2.0476 -1.2685 18 1 -0.5400 -0.9353 -0.0051 19 1 -0.5400 0.9352 0.0095 20 1 2.3641 1.5821 -1.0175 21 1 1.7826 2.0098 0.6217 22 1 3.4870 0.6738 1.6958 23 1 4.3764 1.3444 0.2876 24 1 6.4835 -2.7780 -1.3756 25 1 0.8821 -2.3098 1.2959 26 1 2.5218 -2.9920 1.1774 27 1 2.2395 -1.5134 2.1273 28 1 2.1431 -1.4333 -2.1493 29 1 2.6234 -2.9089 -1.2774 30 1 0.9208 -2.3899 -1.2780 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075538539.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:08 Heat of formation + Delta-G solvation = -7.742439 kcal Electronic energy + Delta-G solvation = -11238.047860 eV Core-core repulsion = 9418.637735 eV Total energy + Delta-G solvation = -1819.410125 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.33360 -32.81987 -31.25202 -30.45076 -26.57686 -25.75425 -23.07497 -22.12440 -19.13600 -16.70593 -15.95084 -14.73469 -14.32895 -13.79432 -13.16765 -12.43888 -12.22555 -12.06321 -11.76560 -11.56617 -11.04466 -10.87648 -10.53259 -10.50008 -10.27599 -10.12667 -9.39836 -9.33693 -8.87474 -8.79531 -8.38308 -8.27770 -5.98055 -3.97566 2.97989 3.31255 3.38694 3.41857 4.45985 5.22570 5.45657 5.67492 6.05595 6.14945 6.23465 6.27240 6.39468 6.44332 6.52667 6.60010 6.84864 6.90841 6.95618 7.01545 7.17190 7.27636 7.33586 7.41193 7.60770 7.80443 7.86122 8.00449 8.53542 9.11398 9.63362 11.11254 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.056523 B = 0.014339 C = 0.013704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.256292 B = 1952.219857 C = 2042.761060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.086 4.086 3 C -0.101 4.101 4 C -0.118 4.118 5 C 0.043 3.957 6 H 0.071 0.929 7 C -0.498 4.498 8 H 0.055 0.945 9 C 0.064 3.936 10 N -0.894 5.894 11 Si 0.885 3.115 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C -0.043 4.043 16 C -0.104 4.104 17 C -0.117 4.117 18 H 0.092 0.908 19 H 0.087 0.913 20 H 0.067 0.933 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.260 0.740 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 2.461 1.275 6.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.086 4.086 3 C -0.138 4.138 4 C -0.156 4.156 5 C 0.024 3.976 6 H 0.089 0.911 7 C -0.536 4.536 8 H 0.073 0.927 9 C -0.137 4.137 10 N -0.533 5.533 11 Si 0.713 3.287 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.043 4.043 16 C -0.162 4.162 17 C -0.175 4.175 18 H 0.110 0.890 19 H 0.105 0.895 20 H 0.086 0.914 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.856 2.380 1.132 6.422 hybrid contribution 0.570 -0.614 0.528 0.991 sum -5.286 1.765 1.660 5.815 Atomic orbital electron populations 1.22893 0.94593 1.00484 1.08544 1.22667 0.94257 0.97580 0.94128 1.21589 0.96816 0.95087 1.00269 1.22708 0.93635 0.99970 0.99270 1.19825 0.89302 0.89634 0.98846 0.91114 1.21080 1.13642 1.25012 0.93909 0.92700 1.24985 0.97173 0.96713 0.94850 1.69907 1.31689 1.41595 1.10104 0.86712 0.79994 0.81115 0.80884 1.20732 1.21345 1.19925 1.20614 0.97185 0.91962 0.94584 1.21581 0.97236 1.00100 0.97243 1.21655 0.98805 1.00113 0.96881 0.88990 0.89471 0.91411 0.93005 0.92905 0.93096 0.93050 0.96077 0.92029 0.93571 0.93921 0.92034 0.95199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.90 13.96 29.02 0.41 -3.50 16 2 C -0.09 -1.67 4.90 -100.13 -0.49 -2.16 16 3 C -0.10 -1.89 6.65 -26.19 -0.17 -2.07 16 4 C -0.12 -2.55 6.38 -24.56 -0.16 -2.70 16 5 C 0.04 1.04 2.58 -90.06 -0.23 0.81 16 6 H 0.07 1.94 6.75 -51.93 -0.35 1.59 16 7 C -0.50 -13.29 6.48 -34.44 -0.22 -13.51 16 8 H 0.05 1.46 7.00 -52.49 -0.37 1.09 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -25.59 12.66 55.43 0.70 -24.89 16 11 Si 0.88 21.16 29.54 -169.99 -5.02 16.14 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C -0.04 -0.93 0.76 -154.62 -0.12 -1.05 16 16 C -0.10 -2.20 7.27 37.16 0.27 -1.93 16 17 C -0.12 -2.48 8.29 37.15 0.31 -2.17 16 18 H 0.09 1.51 7.96 -52.48 -0.42 1.09 16 19 H 0.09 1.32 8.06 -52.49 -0.42 0.90 16 20 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 1.14 8.05 -51.93 -0.42 0.72 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.39 7.81 -51.93 -0.41 -0.02 16 26 H 0.06 1.37 7.44 -51.93 -0.39 0.99 16 27 H 0.05 0.98 7.48 -51.93 -0.39 0.59 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 LS Contribution 243.89 15.07 3.68 3.68 Total: -1.00 -27.34 243.89 -5.98 -33.31 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.82 Total: -1.62 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -0.51 Total: -26.62 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.70 Total: -24.89 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.34 -5.98 -33.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538539.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.571 kcal (2) G-P(sol) polarization free energy of solvation -27.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds