Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09004 * 109.35407 * 2 1 4 4 C 1.50060 * 109.35644 * 119.72327 * 2 1 3 5 5 C 1.29452 * 124.07388 * 102.94044 * 4 2 1 6 6 C 1.50070 * 124.07339 * 0.72572 * 5 4 2 7 7 C 1.53175 * 110.06164 * 342.43433 * 6 5 4 8 8 C 1.53020 * 109.24412 * 240.34793 * 2 1 3 9 9 H 1.08995 * 109.64257 * 169.61583 * 8 2 1 10 10 C 1.52996 * 109.64282 * 48.97835 * 8 2 1 11 11 C 1.50706 * 109.46813 * 174.99864 * 10 8 2 12 12 H 1.08002 * 120.00297 * 0.02562 * 11 10 8 13 13 C 1.37887 * 119.99851 * 179.97438 * 11 10 8 14 14 N 1.31511 * 119.99657 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99684 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47182 * 60.00676 * 15 13 11 17 17 H 1.48506 * 109.46672 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47606 * 300.00166 * 15 13 11 19 19 H 1.08998 * 109.46624 * 300.27492 * 1 2 3 20 20 H 1.08997 * 109.46921 * 60.27129 * 1 2 3 21 21 H 1.08997 * 109.46598 * 180.27621 * 1 2 3 22 22 H 1.07994 * 117.96623 * 282.95730 * 4 2 1 23 23 H 1.08002 * 117.95997 * 180.43936 * 5 4 2 24 24 H 1.09008 * 109.35692 * 102.81449 * 6 5 4 25 25 H 1.08999 * 109.35595 * 222.40096 * 6 5 4 26 26 H 1.09002 * 109.83997 * 290.06104 * 7 6 5 27 27 H 1.09003 * 109.75816 * 169.44857 * 7 6 5 28 28 H 1.08997 * 109.47617 * 295.00175 * 10 8 2 29 29 H 1.09002 * 109.46887 * 55.00519 * 10 8 2 30 30 H 0.97002 * 119.99519 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8914 1.0284 0.0000 4 6 2.0275 -0.7020 1.2295 5 6 2.4944 -1.9093 1.2365 6 6 2.6180 -2.7701 0.0134 7 6 1.7403 -2.2134 -1.1118 8 6 2.0345 -0.7147 -1.2555 9 1 3.1085 -0.5604 -1.3585 10 6 1.3111 -0.1644 -2.4862 11 6 1.8961 -0.7816 -3.7305 12 1 2.7028 -1.4953 -3.6513 13 6 1.4006 -0.4359 -4.9699 14 7 0.4179 0.4328 -5.0662 15 14 2.1252 -1.2014 -6.5120 16 1 1.9588 -2.6760 -6.4578 17 1 1.4232 -0.6671 -7.7066 18 1 3.5700 -0.8692 -6.5978 19 1 -0.3632 0.5181 0.8875 20 1 -0.3633 0.5096 -0.8924 21 1 -0.3632 -1.0277 0.0050 22 1 1.9935 -0.1668 2.1669 23 1 2.8193 -2.3211 2.1806 24 1 3.6585 -2.7892 -0.3113 25 1 2.2972 -3.7842 0.2514 26 1 0.6882 -2.3584 -0.8664 27 1 1.9722 -2.7236 -2.0467 28 1 0.2506 -0.4083 -2.4237 29 1 1.4333 0.9180 -2.5257 30 1 0.0696 0.6763 -5.9382 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075538595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = -15.631728 kcal Electronic energy + Delta-G solvation = -10939.268058 eV Core-core repulsion = 9119.515828 eV Total energy + Delta-G solvation = -1819.752230 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.55982 -33.35269 -31.82576 -30.86559 -27.53540 -25.31880 -22.94524 -21.91144 -19.50773 -16.80231 -16.04294 -15.61032 -14.42390 -13.84254 -13.40302 -13.17410 -12.25368 -12.17075 -11.93947 -11.77198 -11.21344 -11.01239 -10.87872 -10.67074 -10.33638 -10.01393 -9.70606 -9.39942 -8.89408 -8.84062 -8.53410 -8.27323 -5.93973 -3.94735 2.71877 3.36186 3.40590 3.43084 4.50522 5.21968 5.38438 5.41551 5.63358 5.78479 5.82837 6.01618 6.10066 6.16220 6.26505 6.46863 6.50057 6.63414 6.68699 6.83972 7.02393 7.12180 7.19625 7.34717 7.42271 7.75494 7.92887 8.07242 8.51789 9.11693 9.68168 11.17348 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.060390 B = 0.011691 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.543049 B = 2394.420095 C = 2718.847399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 H 0.067 0.933 4 C -0.143 4.143 5 C -0.162 4.162 6 C -0.092 4.092 7 C -0.108 4.108 8 C -0.076 4.076 9 H 0.055 0.945 10 C 0.027 3.973 11 C -0.514 4.514 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 H 0.038 0.962 20 H 0.070 0.930 21 H 0.052 0.948 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.022 0.978 29 H 0.014 0.986 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -3.218 9.322 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 H 0.086 0.914 4 C -0.162 4.162 5 C -0.180 4.180 6 C -0.129 4.129 7 C -0.145 4.145 8 C -0.094 4.094 9 H 0.074 0.926 10 C -0.010 4.010 11 C -0.553 4.553 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 H 0.057 0.943 20 H 0.089 0.911 21 H 0.071 0.929 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.885 -3.128 9.196 9.895 hybrid contribution 0.412 -0.353 -0.775 0.946 sum 2.297 -3.481 8.422 9.398 Atomic orbital electron populations 1.21834 0.94889 1.01627 1.01251 1.20136 0.95842 0.98780 0.93301 0.91426 1.22153 0.99437 0.96114 0.98455 1.22028 1.01523 0.96144 0.98274 1.20534 1.00490 0.97619 0.94236 1.21658 0.98509 0.96962 0.97389 1.21282 0.99650 0.93918 0.94554 0.92639 1.19185 0.95694 0.95830 0.90296 1.21255 1.18128 1.24662 0.91227 0.92763 1.25009 0.95164 0.95299 0.99011 1.69953 1.26363 1.33210 1.24126 0.86720 0.79252 0.79581 0.82810 1.20320 1.21398 1.20357 0.94253 0.91113 0.92915 0.89119 0.89130 0.91562 0.92305 0.92601 0.90858 0.95968 0.96815 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.34 37.16 0.31 -2.12 16 2 C -0.06 -1.13 2.80 -92.07 -0.26 -1.39 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 4 C -0.14 -2.28 9.04 -35.91 -0.32 -2.60 16 5 C -0.16 -2.47 9.80 -35.90 -0.35 -2.82 16 6 C -0.09 -1.47 6.12 -28.10 -0.17 -1.64 16 7 C -0.11 -2.08 5.18 -26.43 -0.14 -2.22 16 8 C -0.08 -1.59 1.97 -90.40 -0.18 -1.77 16 9 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 10 C 0.03 0.69 3.56 -27.88 -0.10 0.59 16 11 C -0.51 -14.48 8.33 -34.43 -0.29 -14.76 16 12 H 0.05 1.49 7.18 -52.49 -0.38 1.11 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 15 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.07 1.37 6.37 -51.93 -0.33 1.04 16 21 H 0.05 0.92 6.57 -51.93 -0.34 0.58 16 22 H 0.09 1.26 8.06 -52.49 -0.42 0.84 16 23 H 0.09 1.19 8.06 -52.49 -0.42 0.76 16 24 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.07 6.43 -51.93 -0.33 0.74 16 27 H 0.07 1.53 6.90 -51.93 -0.36 1.17 16 28 H 0.02 0.60 6.63 -51.93 -0.34 0.25 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 238.06 15.07 3.59 3.59 Total: -1.00 -29.18 238.06 -6.89 -36.07 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.60 Total: -2.93 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -1.59 Total: -27.23 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.18 -6.89 -36.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.443 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds