Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09004 * 109.35407 * 2 1 4 4 C 1.50060 * 109.35644 * 119.72327 * 2 1 3 5 5 C 1.29452 * 124.07388 * 102.94044 * 4 2 1 6 6 C 1.50070 * 124.07339 * 0.72572 * 5 4 2 7 7 C 1.53175 * 110.06164 * 342.43433 * 6 5 4 8 8 C 1.53020 * 109.24412 * 240.34793 * 2 1 3 9 9 H 1.08995 * 109.64257 * 169.61583 * 8 2 1 10 10 C 1.52996 * 109.64282 * 48.97835 * 8 2 1 11 11 C 1.50706 * 109.46813 * 174.99864 * 10 8 2 12 12 H 1.08002 * 120.00297 * 0.02562 * 11 10 8 13 13 C 1.37887 * 119.99851 * 179.97438 * 11 10 8 14 14 N 1.31511 * 119.99657 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99684 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47182 * 60.00676 * 15 13 11 17 17 H 1.48506 * 109.46672 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47606 * 300.00166 * 15 13 11 19 19 H 1.08998 * 109.46624 * 300.27492 * 1 2 3 20 20 H 1.08997 * 109.46921 * 60.27129 * 1 2 3 21 21 H 1.08997 * 109.46598 * 180.27621 * 1 2 3 22 22 H 1.07994 * 117.96623 * 282.95730 * 4 2 1 23 23 H 1.08002 * 117.95997 * 180.43936 * 5 4 2 24 24 H 1.09008 * 109.35692 * 102.81449 * 6 5 4 25 25 H 1.08999 * 109.35595 * 222.40096 * 6 5 4 26 26 H 1.09002 * 109.83997 * 290.06104 * 7 6 5 27 27 H 1.09003 * 109.75816 * 169.44857 * 7 6 5 28 28 H 1.08997 * 109.47617 * 295.00175 * 10 8 2 29 29 H 1.09002 * 109.46887 * 55.00519 * 10 8 2 30 30 H 0.97002 * 119.99519 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8914 1.0284 0.0000 4 6 2.0275 -0.7020 1.2295 5 6 2.4944 -1.9093 1.2365 6 6 2.6180 -2.7701 0.0134 7 6 1.7403 -2.2134 -1.1118 8 6 2.0345 -0.7147 -1.2555 9 1 3.1085 -0.5604 -1.3585 10 6 1.3111 -0.1644 -2.4862 11 6 1.8961 -0.7816 -3.7305 12 1 2.7028 -1.4953 -3.6513 13 6 1.4006 -0.4359 -4.9699 14 7 0.4179 0.4328 -5.0662 15 14 2.1252 -1.2014 -6.5120 16 1 1.9588 -2.6760 -6.4578 17 1 1.4232 -0.6671 -7.7066 18 1 3.5700 -0.8692 -6.5978 19 1 -0.3632 0.5181 0.8875 20 1 -0.3633 0.5096 -0.8924 21 1 -0.3632 -1.0277 0.0050 22 1 1.9935 -0.1668 2.1669 23 1 2.8193 -2.3211 2.1806 24 1 3.6585 -2.7892 -0.3113 25 1 2.2972 -3.7842 0.2514 26 1 0.6882 -2.3584 -0.8664 27 1 1.9722 -2.7236 -2.0467 28 1 0.2506 -0.4083 -2.4237 29 1 1.4333 0.9180 -2.5257 30 1 0.0696 0.6763 -5.9382 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075538595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = -31.471749 kcal Electronic energy + Delta-G solvation = -10939.954932 eV Core-core repulsion = 9119.515828 eV Total energy + Delta-G solvation = -1820.439105 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.04891 -35.32557 -33.43109 -32.46784 -29.28866 -27.01701 -24.84566 -23.35948 -21.13256 -18.66034 -17.81087 -17.00338 -16.42258 -15.28542 -15.00500 -14.73446 -14.01782 -13.77240 -13.60457 -13.38055 -12.95449 -12.67766 -12.57795 -12.41315 -12.07656 -11.79117 -11.46556 -11.13371 -10.76953 -10.54058 -10.46595 -9.79253 -8.15877 -6.24834 1.39367 1.42114 1.49749 1.52390 2.42522 3.16888 3.92541 4.01975 4.11835 4.41752 4.49097 4.60765 4.69996 4.77431 4.87571 4.97790 5.06349 5.12502 5.20724 5.33937 5.41123 5.46918 5.53918 5.63128 5.84430 5.91854 5.95062 6.19244 6.33986 6.91382 7.42810 8.95645 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.060390 B = 0.011691 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.543049 B = 2394.420095 C = 2718.847399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 H 0.063 0.937 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.090 4.090 7 C -0.105 4.105 8 C -0.072 4.072 9 H 0.045 0.955 10 C 0.035 3.965 11 C -0.532 4.532 12 H 0.058 0.942 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.959 3.041 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.269 1.269 19 H 0.067 0.933 20 H 0.039 0.961 21 H 0.051 0.949 22 H 0.119 0.881 23 H 0.125 0.875 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.001 0.999 29 H -0.018 1.018 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 -4.485 10.536 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 H 0.082 0.918 4 C -0.172 4.172 5 C -0.174 4.174 6 C -0.126 4.126 7 C -0.143 4.143 8 C -0.090 4.090 9 H 0.063 0.937 10 C -0.002 4.002 11 C -0.570 4.570 12 H 0.076 0.924 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.784 3.216 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.194 1.194 19 H 0.086 0.914 20 H 0.058 0.942 21 H 0.070 0.930 22 H 0.137 0.863 23 H 0.143 0.857 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.019 0.981 29 H 0.000 1.000 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.852 -4.402 10.422 11.668 hybrid contribution 0.092 0.061 -1.161 1.166 sum 2.945 -4.341 9.261 10.643 Atomic orbital electron populations 1.21760 0.94691 1.01516 1.01116 1.20075 0.96104 0.98642 0.93250 0.91817 1.22140 1.00377 0.96621 0.98034 1.22249 1.00468 0.95595 0.99045 1.20527 0.99879 0.98949 0.93294 1.21570 0.99234 0.95400 0.98071 1.21138 0.98279 0.95601 0.94018 0.93675 1.19043 0.94959 0.93847 0.92330 1.21668 1.18223 1.24712 0.92426 0.92419 1.25933 0.95527 0.95763 1.02651 1.70095 1.27769 1.34616 1.25016 0.85596 0.78659 0.79011 0.78372 1.19184 1.20969 1.19397 0.91370 0.94184 0.92998 0.86339 0.85727 0.91084 0.89896 0.92915 0.93092 0.98082 1.00009 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.34 71.99 0.60 -4.06 16 2 C -0.06 -2.22 2.80 -11.73 -0.03 -2.26 16 3 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 4 C -0.15 -4.41 9.04 27.03 0.24 -4.17 16 5 C -0.16 -4.16 9.80 27.03 0.26 -3.89 16 6 C -0.09 -2.63 6.12 29.71 0.18 -2.45 16 7 C -0.11 -4.02 5.18 30.79 0.16 -3.86 16 8 C -0.07 -3.06 1.97 -10.65 -0.02 -3.08 16 9 H 0.04 1.98 8.12 -2.39 -0.02 1.96 16 10 C 0.04 1.88 3.56 29.85 0.11 1.99 16 11 C -0.53 -30.70 8.33 25.60 0.21 -30.48 16 12 H 0.06 3.21 7.18 -2.91 -0.02 3.19 16 13 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 14 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 15 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 20 H 0.04 1.61 6.37 -2.39 -0.02 1.59 16 21 H 0.05 1.78 6.57 -2.39 -0.02 1.77 16 22 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 23 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 24 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 26 H 0.05 2.01 6.43 -2.39 -0.02 2.00 16 27 H 0.05 2.13 6.90 -2.39 -0.02 2.12 16 28 H 0.00 0.05 6.63 -2.39 -0.02 0.03 16 29 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -63.44 238.06 5.58 -57.86 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.09 Total: 4.47 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 2.18 Total: -51.88 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.28 Total: -57.54 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -63.44 5.58 -57.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.388 kcal (2) G-P(sol) polarization free energy of solvation -63.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds