Wall clock time and date at job start Mon Mar 30 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86795 * 120.00125 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00545 * 3 2 1 5 5 H 1.48502 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46947 * 120.00676 * 3 2 1 7 7 C 1.40311 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.40073 * 120.00193 * 359.97438 * 7 2 1 10 10 C 1.35028 * 119.99848 * 180.28027 * 9 7 2 11 11 C 1.50702 * 120.00173 * 179.72408 * 10 9 7 12 12 C 1.53001 * 109.47039 * 240.00092 * 11 10 9 13 13 C 1.52998 * 109.47027 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47170 * 59.99528 * 13 12 11 15 15 C 1.52996 * 109.47190 * 299.99799 * 14 13 12 16 16 C 1.52998 * 109.47223 * 60.00236 * 15 14 13 17 17 H 0.96999 * 119.99846 * 359.97438 * 1 2 3 18 18 H 1.08002 * 119.99704 * 359.97438 * 9 7 2 19 19 H 1.08002 * 120.00386 * 359.71464 * 10 9 7 20 20 H 1.09007 * 109.46860 * 359.97438 * 11 10 9 21 21 H 1.08998 * 109.46488 * 299.99111 * 12 11 10 22 22 H 1.08991 * 109.47515 * 59.99624 * 12 11 10 23 23 H 1.08998 * 109.46976 * 299.99632 * 13 12 11 24 24 H 1.08997 * 109.47019 * 179.97438 * 13 12 11 25 25 H 1.09003 * 109.46985 * 180.02562 * 14 13 12 26 26 H 1.08998 * 109.47086 * 60.00172 * 14 13 12 27 27 H 1.08998 * 109.47410 * 300.00174 * 15 14 13 28 28 H 1.08999 * 109.47475 * 179.97438 * 15 14 13 29 29 H 1.08995 * 109.47672 * 179.97438 * 16 15 14 30 30 H 1.09007 * 109.47082 * 59.99670 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6965 -1.2125 5 1 1.2760 2.7465 0.0006 6 1 3.0948 1.6962 1.2125 7 6 2.0084 -1.2152 -0.0005 8 1 3.0884 -1.2151 -0.0010 9 6 1.3080 -2.4282 -0.0005 10 6 1.9832 -3.5976 0.0047 11 6 1.2297 -4.9027 0.0109 12 6 1.5998 -5.6992 1.2638 13 6 0.8343 -7.0239 1.2705 14 6 1.2029 -7.8322 0.0248 15 6 0.8328 -7.0357 -1.2279 16 6 1.5982 -5.7110 -1.2347 17 1 -0.4850 0.8400 0.0004 18 1 0.2280 -2.4281 0.0003 19 1 3.0632 -3.5977 0.0042 20 1 0.1580 -4.7035 0.0108 21 1 2.6714 -5.8984 1.2642 22 1 1.3368 -5.1236 2.1512 23 1 -0.2372 -6.8244 1.2702 24 1 1.0983 -7.5915 2.1628 25 1 0.6572 -8.7758 0.0294 26 1 2.2745 -8.0318 0.0251 27 1 -0.2388 -6.8362 -1.2282 28 1 1.0957 -7.6114 -2.1154 29 1 1.3349 -5.1437 -2.1274 30 1 2.6699 -5.9106 -1.2344 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075538599.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:39 Heat of formation + Delta-G solvation = -51.569045 kcal Electronic energy + Delta-G solvation = -10500.890537 eV Core-core repulsion = 8679.579949 eV Total energy + Delta-G solvation = -1821.310589 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.31827 -36.15645 -33.77285 -31.49326 -30.80062 -26.76124 -23.25064 -23.14255 -20.58848 -20.25524 -18.85810 -16.74347 -16.21313 -15.09246 -14.93700 -14.92513 -14.56650 -13.62891 -13.34270 -13.01904 -13.01161 -12.92451 -12.47741 -11.91997 -11.90137 -11.80405 -11.50624 -11.46147 -11.18672 -10.91059 -10.62992 -9.65107 -8.69214 -6.31351 1.25867 1.34560 1.48009 1.96837 2.20598 3.36498 3.93426 4.08740 4.08995 4.46370 4.52662 4.71250 4.75374 4.81952 4.87708 4.91259 4.97288 5.20706 5.20866 5.29163 5.33849 5.35052 5.45489 5.56379 5.70773 5.73582 5.97025 6.38494 6.61751 7.04174 7.21077 8.36781 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.090113 B = 0.007988 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.646955 B = 3504.549433 C = 3534.696217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.025 3.975 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.020 3.980 10 C -0.397 4.397 11 C -0.015 4.015 12 C -0.104 4.104 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.104 4.104 17 H 0.290 0.710 18 H 0.055 0.945 19 H 0.061 0.939 20 H 0.030 0.970 21 H 0.052 0.948 22 H 0.039 0.961 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.153 -8.630 0.041 8.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.187 4.187 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.536 4.536 8 H 0.081 0.919 9 C 0.000 4.000 10 C -0.419 4.419 11 C -0.033 4.033 12 C -0.142 4.142 13 C -0.154 4.154 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.142 4.142 17 H 0.100 0.900 18 H 0.074 0.926 19 H 0.079 0.921 20 H 0.048 0.952 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.926 -8.484 0.041 8.534 hybrid contribution 0.209 1.040 -0.003 1.061 sum 1.134 -7.444 0.038 7.530 Atomic orbital electron populations 1.69623 1.09194 1.31039 1.38861 1.27051 0.95734 1.05261 0.90669 0.85149 0.78620 0.75142 0.80110 1.18336 1.18713 1.18344 1.19775 0.94474 0.92289 1.47034 0.91919 1.19960 0.95519 0.93376 0.91095 1.22265 0.95755 0.93069 1.30809 1.19599 0.96277 0.92887 0.94585 1.21519 0.99677 0.95870 0.97133 1.21563 0.99683 0.95407 0.98726 1.21504 1.01530 0.98190 0.93719 1.21563 0.99680 0.95443 0.98694 1.21521 0.99680 0.95839 0.97165 0.89967 0.92630 0.92111 0.95163 0.92909 0.94247 0.92653 0.90854 0.90265 0.91896 0.92653 0.90855 0.94240 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.32 12.86 21.89 0.28 -48.04 16 2 C 0.03 1.37 5.50 85.37 0.47 1.84 16 3 Si 0.99 40.72 29.56 68.60 2.03 42.75 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 7 C -0.51 -29.79 9.05 23.22 0.21 -29.58 16 8 H 0.06 3.62 7.85 -2.91 -0.02 3.60 16 9 C 0.02 1.21 9.00 21.98 0.20 1.40 16 10 C -0.40 -20.98 8.53 24.95 0.21 -20.77 16 11 C -0.01 -0.65 2.49 -11.54 -0.03 -0.68 16 12 C -0.10 -3.84 5.19 30.59 0.16 -3.68 16 13 C -0.12 -3.30 5.92 30.59 0.18 -3.12 16 14 C -0.11 -2.80 5.92 30.59 0.18 -2.61 16 15 C -0.12 -3.30 5.92 30.59 0.18 -3.12 16 16 C -0.10 -3.84 5.19 30.59 0.16 -3.68 16 17 H 0.29 14.62 8.29 -92.71 -0.77 13.85 16 18 H 0.06 3.46 7.26 -2.91 -0.02 3.44 16 19 H 0.06 3.29 8.05 -2.91 -0.02 3.27 16 20 H 0.03 1.39 7.84 -2.38 -0.02 1.37 16 21 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -61.14 247.18 5.30 -55.83 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.07 Total: 13.45 kcal Atomic # 6 Polarization: -65.92 SS G_CDS: 1.92 Total: -63.99 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.28 Total: -48.04 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -61.14 5.30 -55.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075538599.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.263 kcal (2) G-P(sol) polarization free energy of solvation -61.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds