Wall clock time and date at job start Mon Mar 30 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 N 1.33326 * 126.46052 * 300.02431 * 4 2 1 6 6 C 1.30801 * 109.25767 * 179.97438 * 5 4 2 7 7 O 1.34015 * 109.69018 * 0.02562 * 6 5 4 8 8 C 1.35485 * 107.71494 * 359.75082 * 7 6 5 9 9 C 1.39848 * 126.87095 * 180.28332 * 8 7 6 10 10 H 1.07999 * 119.99382 * 180.12761 * 9 8 7 11 11 C 1.40163 * 120.00140 * 0.12201 * 9 8 7 12 12 N 1.30800 * 119.99980 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00003 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47255 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47425 * 119.99882 * 13 11 9 16 16 H 1.48504 * 109.47209 * 239.99868 * 13 11 9 17 17 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 19 19 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 20 20 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 24 24 H 1.08001 * 125.15613 * 180.02562 * 6 5 4 25 25 H 0.97000 * 119.99972 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7905 -0.3692 2.4965 6 6 2.3891 -1.2163 3.2934 7 8 3.0402 -2.1359 2.5679 8 6 2.8331 -1.8512 1.2596 9 6 3.3256 -2.5591 0.1587 10 1 3.0917 -2.2304 -0.8431 11 6 4.1229 -3.6950 0.3554 12 7 4.4058 -4.0932 1.5688 13 14 4.7813 -4.6401 -1.1152 14 1 4.3216 -3.9890 -2.3682 15 1 6.2658 -4.6449 -1.0763 16 1 4.2804 -6.0374 -1.0702 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 0.5139 0.8900 20 1 1.8934 -0.5138 -0.8899 21 1 1.6767 1.9563 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 2.3625 -1.1801 4.3725 25 1 4.9573 -4.8795 1.7050 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075600749.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:50 Heat of formation + Delta-G solvation = -16.548658 kcal Electronic energy + Delta-G solvation = -10811.073633 eV Core-core repulsion = 8790.022637 eV Total energy + Delta-G solvation = -2021.050996 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.87203 -34.86709 -33.83557 -31.72953 -29.10111 -26.29822 -25.02608 -21.71089 -20.77925 -18.52167 -17.35734 -15.62715 -14.83496 -14.40837 -13.74398 -13.42734 -12.85793 -12.31266 -12.26759 -11.44637 -11.43857 -11.40820 -10.91755 -10.50104 -10.39008 -10.01141 -9.89109 -9.64844 -9.19193 -8.67988 -7.36800 -6.94760 -4.50740 2.81210 2.98731 3.04779 3.48872 3.79798 4.30854 4.97261 5.08907 5.74878 5.86071 6.16225 6.18944 6.34871 6.51490 6.64863 6.67395 6.90384 7.03030 7.11309 7.14022 7.35926 7.68195 8.12609 8.32492 8.53956 8.60214 9.75934 10.04718 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.045081 B = 0.015349 C = 0.012392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.954828 B = 1823.778808 C = 2258.972575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.022 3.978 3 C -0.133 4.133 4 C -0.199 4.199 5 N -0.455 5.455 6 C -0.005 4.005 7 O -0.193 6.193 8 C 0.180 3.820 9 C -0.432 4.432 10 H 0.107 0.893 11 C 0.065 3.935 12 N -0.774 5.774 13 Si 0.923 3.077 14 H -0.257 1.257 15 H -0.271 1.271 16 H -0.271 1.271 17 H 0.046 0.954 18 H 0.038 0.962 19 H 0.051 0.949 20 H 0.067 0.933 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.205 0.795 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 1.348 -3.483 3.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.003 3.997 3 C -0.191 4.191 4 C -0.325 4.325 5 N -0.183 5.183 6 C -0.225 4.225 7 O -0.080 6.080 8 C 0.125 3.875 9 C -0.462 4.462 10 H 0.124 0.876 11 C -0.156 4.156 12 N -0.400 5.400 13 Si 0.747 3.253 14 H -0.180 1.180 15 H -0.196 1.196 16 H -0.196 1.196 17 H 0.065 0.935 18 H 0.057 0.943 19 H 0.070 0.930 20 H 0.085 0.915 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.221 0.779 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.187 1.669 -3.033 3.660 hybrid contribution 0.771 -1.098 -0.503 1.432 sum -0.416 0.572 -3.535 3.605 Atomic orbital electron populations 1.21754 0.96572 1.00767 0.99976 1.18820 0.93644 0.93740 0.93526 1.21752 1.00510 0.96822 0.99978 1.21068 1.16409 1.03421 0.91579 1.69212 1.20397 1.26556 1.02173 1.26476 1.05612 0.92547 0.97890 1.84759 1.59455 1.46842 1.16973 1.20374 0.92856 0.92633 0.81685 1.18758 1.27178 1.08049 0.92210 0.87564 1.26172 0.94693 0.97176 0.97552 1.69785 1.26959 1.21033 1.22202 0.85991 0.79016 0.79284 0.81021 1.18007 1.19579 1.19574 0.93490 0.94301 0.93019 0.91513 0.93018 0.93492 0.94299 0.77851 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.18 37.16 0.34 -2.23 15 2 C 0.02 0.47 3.30 -91.77 -0.30 0.17 15 3 C -0.13 -2.57 9.18 37.16 0.34 -2.23 15 4 C -0.20 -5.17 5.77 -81.50 -0.47 -5.64 15 5 N -0.46 -11.85 11.23 -10.12 -0.11 -11.97 15 6 C 0.00 -0.13 13.18 52.32 0.69 0.56 15 7 O -0.19 -5.49 9.17 3.09 0.03 -5.46 15 8 C 0.18 5.05 6.83 -38.54 -0.26 4.78 15 9 C -0.43 -11.46 9.09 -38.26 -0.35 -11.81 15 10 H 0.11 2.61 6.88 -52.49 -0.36 2.25 15 11 C 0.07 1.64 5.50 -17.27 -0.09 1.54 15 12 N -0.77 -20.47 12.06 55.56 0.67 -19.80 15 13 Si 0.92 18.24 29.56 -169.99 -5.03 13.22 15 14 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 15 H -0.27 -5.25 7.11 56.52 0.40 -4.84 15 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 17 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 18 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 19 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.07 1.42 6.93 -51.93 -0.36 1.06 15 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.21 4.20 8.06 -52.49 -0.42 3.78 15 25 H 0.28 6.73 8.30 -40.82 -0.34 6.39 15 LS Contribution 224.38 15.07 3.38 3.38 Total: -1.00 -29.61 224.38 -3.98 -33.59 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -2.81 Total: 1.88 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.11 Total: -14.85 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.56 Total: -31.76 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: 0.03 Total: -5.46 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -29.61 -3.98 -33.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075600749.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.044 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds