Wall clock time and date at job start Mon Mar 30 2020 02:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46953 * 2 1 4 4 C 1.50704 * 109.47363 * 240.00404 * 2 1 3 5 5 N 1.30803 * 125.15349 * 59.68506 * 4 2 1 6 6 C 1.33329 * 109.25335 * 179.89401 * 5 4 2 7 7 C 1.39417 * 107.08062 * 0.36973 * 6 5 4 8 8 C 1.39848 * 126.86985 * 179.81578 * 7 6 5 9 9 H 1.08004 * 120.00336 * 353.37921 * 8 7 6 10 10 C 1.40171 * 119.99899 * 173.38363 * 8 7 6 11 11 N 1.30802 * 119.99864 * 178.07693 * 10 8 7 12 12 Si 1.86793 * 120.00029 * 358.06988 * 10 8 7 13 13 H 1.48503 * 109.47229 * 65.07102 * 12 10 8 14 14 H 1.48504 * 109.47558 * 185.07100 * 12 10 8 15 15 H 1.48502 * 109.47462 * 305.07382 * 12 10 8 16 16 O 1.34013 * 125.15602 * 240.00149 * 4 2 1 17 17 H 1.08992 * 109.47400 * 60.00376 * 1 2 3 18 18 H 1.08996 * 109.47129 * 299.99627 * 1 2 3 19 19 H 1.09006 * 109.46725 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47825 * 120.00101 * 2 1 3 21 21 H 1.08996 * 109.46899 * 60.00232 * 3 2 1 22 22 H 1.09003 * 109.47117 * 180.02562 * 3 2 1 23 23 H 1.09007 * 109.47166 * 300.00311 * 3 2 1 24 24 H 1.07998 * 126.46033 * 180.11117 * 6 5 4 25 25 H 0.96996 * 119.99612 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 1.7745 -0.3557 -2.4629 6 6 2.3777 -1.2011 -3.2990 7 6 3.0448 -2.1436 -2.5178 8 6 3.8084 -3.2226 -2.9742 9 1 3.8400 -3.4542 -4.0286 10 6 4.5327 -4.0038 -2.0631 11 7 5.2167 -5.0356 -2.4854 12 14 4.5213 -3.5710 -0.2461 13 1 3.1486 -3.7404 0.2946 14 1 5.4543 -4.4678 0.4824 15 1 4.9519 -2.1607 -0.0703 16 8 2.8061 -1.8045 -1.2280 17 1 -0.3634 0.5137 -0.8899 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 1.8934 -0.5138 0.8899 21 1 1.6766 1.9563 0.8900 22 1 3.1300 1.4426 -0.0005 23 1 1.6765 1.9564 -0.8900 24 1 2.3508 -1.1653 -4.3781 25 1 5.7182 -5.5759 -1.8550 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082408429.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:20 Heat of formation + Delta-G solvation = -37.011555 kcal Electronic energy + Delta-G solvation = -10804.662186 eV Core-core repulsion = 8782.723852 eV Total energy + Delta-G solvation = -2021.938334 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.32187 -36.65159 -35.63107 -34.83581 -31.61059 -27.98861 -26.94961 -24.04093 -22.50535 -21.08797 -19.71729 -17.76511 -17.06358 -16.93917 -15.39962 -15.18514 -14.75536 -14.41707 -13.96588 -13.54177 -13.23017 -13.17824 -12.94559 -12.37168 -12.13039 -11.89890 -11.86563 -11.69745 -11.49161 -10.94256 -9.66339 -9.13052 -6.69834 0.79206 1.13762 1.31495 1.45329 1.98355 2.12220 2.60915 2.91649 3.67650 4.08956 4.27123 4.37739 4.62744 4.83352 4.84518 4.85133 4.98965 5.06921 5.22680 5.38801 5.39959 5.54633 5.86996 6.11061 6.12658 6.44377 7.43987 7.92382 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.056248 B = 0.015400 C = 0.013154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.680068 B = 1817.723619 C = 2128.106150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.012 3.988 3 C -0.131 4.131 4 C 0.044 3.956 5 N -0.453 5.453 6 C -0.240 4.240 7 C 0.125 3.875 8 C -0.442 4.442 9 H 0.099 0.901 10 C 0.050 3.950 11 N -0.816 5.816 12 Si 0.973 3.027 13 H -0.261 1.261 14 H -0.255 1.255 15 H -0.267 1.267 16 O -0.250 6.250 17 H 0.053 0.947 18 H 0.098 0.902 19 H 0.043 0.957 20 H 0.089 0.911 21 H 0.098 0.902 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.162 0.838 25 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 5.799 8.507 10.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.007 4.007 3 C -0.189 4.189 4 C -0.158 4.158 5 N -0.180 5.180 6 C -0.382 4.382 7 C 0.072 3.928 8 C -0.471 4.471 9 H 0.117 0.883 10 C -0.169 4.169 11 N -0.442 5.442 12 Si 0.796 3.204 13 H -0.186 1.186 14 H -0.180 1.180 15 H -0.192 1.192 16 O -0.144 6.144 17 H 0.072 0.928 18 H 0.116 0.884 19 H 0.062 0.938 20 H 0.107 0.893 21 H 0.116 0.884 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.180 0.820 25 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.878 6.090 8.364 11.049 hybrid contribution 0.702 -0.910 -0.006 1.149 sum -3.175 5.181 8.358 10.333 Atomic orbital electron populations 1.21753 0.91957 1.01788 1.03280 1.19542 0.97034 0.95247 0.88880 1.21766 1.00409 0.93386 1.03306 1.26184 1.02319 0.90945 0.96342 1.69337 1.21016 1.27252 1.00378 1.22940 1.15488 1.00641 0.99128 1.20887 0.96182 0.95778 0.79935 1.18594 1.23338 1.07989 0.97193 0.88327 1.26820 0.91673 0.92767 1.05665 1.69541 1.21584 1.12669 1.40418 0.85258 0.79752 0.79155 0.76186 1.18636 1.18011 1.19228 1.84183 1.58570 1.42048 1.29584 0.92818 0.88375 0.93812 0.89250 0.88351 0.93905 0.92802 0.82040 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.17 71.98 0.66 -3.04 15 2 C 0.01 0.43 3.39 -11.54 -0.04 0.39 15 3 C -0.13 -3.74 9.17 71.98 0.66 -3.08 15 4 C 0.04 2.07 6.80 88.26 0.60 2.67 15 5 N -0.45 -22.69 11.23 -300.13 -3.37 -26.06 15 6 C -0.24 -12.70 11.99 84.75 1.02 -11.68 15 7 C 0.13 6.91 6.53 22.94 0.15 7.06 15 8 C -0.44 -24.93 9.93 23.13 0.23 -24.70 15 9 H 0.10 5.73 8.06 -2.91 -0.02 5.70 15 10 C 0.05 2.66 5.52 85.32 0.47 3.13 15 11 N -0.82 -42.54 13.93 21.87 0.30 -42.23 15 12 Si 0.97 43.46 25.45 68.60 1.75 45.20 15 13 H -0.26 -11.82 7.07 99.48 0.70 -11.11 15 14 H -0.25 -9.97 7.11 99.48 0.71 -9.27 15 15 H -0.27 -12.33 7.04 99.48 0.70 -11.63 15 16 O -0.25 -13.11 6.41 -11.72 -0.08 -13.18 15 17 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 18 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 19 H 0.04 1.31 8.14 -2.38 -0.02 1.29 15 20 H 0.09 2.79 8.14 -2.39 -0.02 2.78 15 21 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.04 1.29 8.14 -2.39 -0.02 1.27 15 23 H 0.05 1.64 8.14 -2.38 -0.02 1.62 15 24 H 0.16 7.98 8.06 -2.91 -0.02 7.96 15 25 H 0.31 14.07 8.29 -92.71 -0.77 13.30 15 Total: -1.00 -61.61 222.16 3.51 -58.10 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.16 Total: 7.43 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 3.75 Total: -29.25 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -3.07 Total: -68.29 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.08 Total: -13.18 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.75 Total: 45.20 kcal Total: -61.61 3.51 -58.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408429.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.084 kcal (2) G-P(sol) polarization free energy of solvation -61.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds