Wall clock time and date at job start Mon Mar 30 2020 01:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86796 * 120.00004 * 2 1 4 4 H 1.48507 * 109.47158 * 269.99873 * 3 2 1 5 5 H 1.48504 * 109.47172 * 29.99735 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99933 * 3 2 1 7 7 C 1.39988 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.41740 * 120.00111 * 0.02562 * 7 2 1 10 10 N 1.32485 * 127.54413 * 359.97438 * 9 7 2 11 11 O 1.20974 * 111.25568 * 179.97438 * 10 9 7 12 12 C 1.33799 * 113.20384 * 359.97438 * 11 10 9 13 13 C 1.35152 * 106.81644 * 0.03245 * 12 11 10 14 14 C 1.50242 * 108.29763 * 179.97438 * 13 12 11 15 15 O 1.44131 * 105.90768 * 342.74409 * 14 13 12 16 16 C 1.44233 * 104.20966 * 27.43135 * 15 14 13 17 17 H 0.97000 * 119.99694 * 0.02562 * 1 2 3 18 18 H 1.09002 * 110.17731 * 101.87709 * 14 13 12 19 19 H 1.08996 * 110.17583 * 223.61609 * 14 13 12 20 20 H 1.09003 * 110.11580 * 213.34201 * 16 15 14 21 21 H 1.08999 * 110.21491 * 91.66233 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4891 2.0464 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4402 0.7000 7 6 2.0075 -1.2123 0.0005 8 1 3.0875 -1.2124 0.0010 9 6 1.2988 -2.4398 0.0005 10 7 -0.0146 -2.6138 0.0005 11 8 -0.3013 -3.7890 0.0000 12 6 0.7684 -4.5927 -0.0009 13 6 1.8581 -3.7932 -0.0003 14 6 3.0822 -4.6642 -0.0007 15 8 2.6366 -5.9721 0.4096 16 6 1.2557 -6.0214 -0.0038 17 1 -0.4850 0.8401 -0.0004 18 1 3.5108 -4.7100 -1.0019 19 1 3.8179 -4.2791 0.7054 20 1 0.6748 -6.6176 0.6999 21 1 1.1774 -6.4428 -1.0061 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082408544.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:40 Heat of formation + Delta-G solvation = 31.804784 kcal Electronic energy + Delta-G solvation = -10564.861218 eV Core-core repulsion = 8410.073890 eV Total energy + Delta-G solvation = -2154.787328 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.75181 -38.55577 -33.96805 -31.58675 -30.31164 -27.80081 -26.33860 -24.01332 -20.39279 -19.96563 -17.18582 -16.28088 -15.81846 -15.11323 -14.88209 -14.68562 -13.35296 -12.99965 -12.48392 -12.00371 -11.34770 -11.30571 -10.98355 -10.64931 -10.15774 -9.88703 -9.67410 -9.14518 -8.24004 -7.76870 -6.63556 -4.59052 2.79552 2.99566 3.09650 3.13839 3.70038 3.91554 3.96896 4.40002 5.25632 5.36016 5.68464 5.70554 6.00399 6.11081 6.39711 6.48085 6.75698 6.98688 7.16078 7.27700 8.24920 8.50102 8.83727 10.31104 10.43333 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.075443 B = 0.013192 C = 0.011347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.052156 B = 2122.047091 C = 2466.922423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.444 4.444 8 H 0.087 0.913 9 C 0.204 3.796 10 N -0.402 5.402 11 O 0.068 5.932 12 C -0.132 4.132 13 C -0.317 4.317 14 C 0.137 3.863 15 O -0.367 6.367 16 C 0.155 3.845 17 H 0.278 0.722 18 H 0.065 0.935 19 H 0.086 0.914 20 H 0.094 0.906 21 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -4.848 -0.653 6.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.152 4.152 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.482 4.482 8 H 0.105 0.895 9 C 0.059 3.941 10 N -0.130 5.130 11 O 0.021 5.979 12 C -0.197 4.197 13 C -0.322 4.322 14 C 0.061 3.939 15 O -0.286 6.286 16 C 0.077 3.923 17 H 0.089 0.911 18 H 0.083 0.917 19 H 0.105 0.895 20 H 0.112 0.888 21 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.432 -4.220 -0.536 4.900 hybrid contribution 0.994 0.779 -0.117 1.268 sum 3.425 -3.441 -0.653 4.899 Atomic orbital electron populations 1.69857 1.07221 1.28743 1.34101 1.25893 0.94938 1.01111 0.93209 0.86155 0.80130 0.80381 0.79099 1.19469 1.20210 1.18583 1.18715 0.93992 0.87564 1.47879 0.89493 1.20548 0.87411 0.90625 0.95501 1.75127 1.14656 0.89454 1.33721 1.84496 1.30803 1.12141 1.70501 1.25259 0.90149 0.97079 1.07251 1.23354 0.96218 0.95308 1.17359 1.20567 0.93504 0.80174 0.99636 1.89198 1.23696 1.33619 1.82092 1.20793 0.82643 0.88176 1.00689 0.91120 0.91703 0.89543 0.88775 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.94 12.05 55.55 0.67 -21.27 14 2 C 0.07 1.85 5.50 -17.35 -0.10 1.76 14 3 Si 0.92 19.47 29.56 -169.99 -5.02 14.45 14 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 14 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 14 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 14 7 C -0.44 -12.42 9.48 -37.59 -0.36 -12.78 14 8 H 0.09 2.25 7.85 -52.49 -0.41 1.84 14 9 C 0.20 5.86 6.98 -82.95 -0.58 5.28 14 10 N -0.40 -11.89 10.52 33.19 0.35 -11.54 14 11 O 0.07 1.80 11.08 17.79 0.20 2.00 14 12 C -0.13 -3.03 8.57 -35.28 -0.30 -3.33 14 13 C -0.32 -7.79 7.53 -102.64 -0.77 -8.56 14 14 C 0.14 2.68 7.61 35.78 0.27 2.96 14 15 O -0.37 -6.80 11.79 -35.23 -0.42 -7.21 14 16 C 0.15 2.67 7.63 36.13 0.28 2.95 14 17 H 0.28 7.16 8.29 -40.82 -0.34 6.82 14 18 H 0.07 1.14 8.14 -51.93 -0.42 0.72 14 19 H 0.09 1.58 8.14 -51.93 -0.42 1.15 14 20 H 0.09 1.37 8.14 -51.93 -0.42 0.95 14 21 H 0.08 1.15 8.14 -51.93 -0.42 0.72 14 LS Contribution 198.35 15.07 2.99 2.99 Total: -1.00 -31.61 198.35 -4.03 -35.64 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -1.24 Total: -3.32 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.56 Total: -11.73 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 1.02 Total: -32.81 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.22 Total: -5.22 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -31.61 -4.03 -35.64 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082408544.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.447 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds