Wall clock time and date at job start Mon Mar 30 2020 02:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86802 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47199 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47319 * 120.00282 * 3 2 1 6 6 H 1.48501 * 109.46860 * 239.99963 * 3 2 1 7 7 C 1.39892 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 154.55630 * 7 2 1 9 9 C 1.41001 * 120.00074 * 334.55305 * 7 2 1 10 10 C 1.40764 * 120.27390 * 334.46284 * 9 7 2 11 11 C 1.36376 * 119.97201 * 180.02562 * 10 9 7 12 12 C 1.39201 * 120.56179 * 359.97438 * 11 10 9 13 13 F 1.35097 * 119.71544 * 180.02562 * 12 11 10 14 14 C 1.38451 * 120.56124 * 0.04355 * 12 11 10 15 15 C 1.38619 * 120.00381 * 359.67327 * 14 12 11 16 16 N 1.38759 * 120.27232 * 180.29650 * 15 14 12 17 17 H 0.97002 * 120.00047 * 174.15452 * 1 2 3 18 18 H 1.07998 * 120.01256 * 0.03236 * 10 9 7 19 19 H 1.08009 * 119.72013 * 180.02562 * 11 10 9 20 20 H 1.08002 * 119.99332 * 179.97438 * 14 12 11 21 21 H 0.97005 * 119.99665 * 180.27501 * 16 15 14 22 22 H 0.97005 * 120.00355 * 0.28173 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 1.2780 2.7465 -0.0006 5 1 3.0969 1.6965 1.2124 6 1 3.0968 1.6965 -1.2125 7 6 2.0086 -1.2115 -0.0005 8 1 3.0100 -1.2566 -0.4024 9 6 1.4062 -2.3736 0.5236 10 6 0.3942 -2.2712 1.4966 11 6 -0.1838 -3.3993 1.9998 12 6 0.2176 -4.6572 1.5591 13 9 -0.3670 -5.7633 2.0688 14 6 1.2111 -4.7843 0.6033 15 6 1.8104 -3.6530 0.0717 16 7 2.8024 -3.7737 -0.8910 17 1 -0.4850 -0.8357 -0.0856 18 1 0.0756 -1.2997 1.8444 19 1 -0.9603 -3.3159 2.7459 20 1 1.5157 -5.7648 0.2683 21 1 3.2219 -2.9795 -1.2574 22 1 3.0763 -4.6523 -1.1978 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083593260.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:08 Heat of formation + Delta-G solvation = -41.916559 kcal Electronic energy + Delta-G solvation = -10367.214437 eV Core-core repulsion = 8221.603101 eV Total energy + Delta-G solvation = -2145.611336 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.51416 -37.93902 -33.89371 -33.10674 -29.09092 -27.76942 -24.76037 -21.31074 -20.70438 -17.89527 -16.53928 -16.17396 -14.65745 -14.27594 -14.10480 -13.97529 -13.60325 -12.73619 -12.38861 -11.76471 -11.34105 -11.06539 -11.04410 -10.42123 -9.89286 -9.64686 -9.36340 -8.97544 -7.55538 -7.25488 -6.63647 -4.26508 2.60418 2.86412 3.14633 3.22419 3.35266 4.02112 4.52143 4.97905 5.41124 5.85606 6.02433 6.24322 6.69748 6.87159 7.17244 7.31996 7.47051 7.70171 7.79869 8.04082 8.18474 8.39819 8.71556 8.90062 8.91312 10.08118 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.061495 B = 0.013710 C = 0.011675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.211686 B = 2041.833329 C = 2397.663904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.039 3.961 3 Si 1.064 2.936 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.072 0.928 9 C 0.049 3.951 10 C -0.182 4.182 11 C -0.148 4.148 12 C -0.012 4.012 13 F -0.173 7.173 14 C -0.202 4.202 15 C 0.137 3.863 16 N -0.878 5.878 17 H 0.299 0.701 18 H 0.114 0.886 19 H 0.099 0.901 20 H 0.100 0.900 21 H 0.395 0.605 22 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -1.185 -0.819 3.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.182 4.182 3 Si 0.888 3.112 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.044 3.956 10 C -0.203 4.203 11 C -0.169 4.169 12 C -0.032 4.032 13 F -0.152 7.152 14 C -0.227 4.227 15 C 0.035 3.965 16 N -0.420 5.420 17 H 0.113 0.887 18 H 0.132 0.868 19 H 0.117 0.883 20 H 0.119 0.881 21 H 0.224 0.776 22 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.980 0.457 -0.702 3.096 hybrid contribution 0.315 -2.030 -0.229 2.067 sum 3.295 -1.573 -0.932 3.768 Atomic orbital electron populations 1.70481 1.08139 1.34240 1.29634 1.26904 0.95677 1.04034 0.91621 0.83643 0.75624 0.74088 0.77808 1.19938 1.20107 1.20346 1.20137 1.02691 0.94193 1.38192 0.90960 1.17381 0.94235 0.90856 0.93176 1.20471 1.02795 0.96850 1.00212 1.20196 1.02421 0.91506 1.02783 1.16926 1.01113 0.81650 1.03522 1.91276 1.84088 1.52866 1.86997 1.19882 1.02672 0.96611 1.03563 1.17572 0.93451 0.92942 0.92529 1.41868 1.44084 1.09107 1.46899 0.88749 0.86793 0.88313 0.88140 0.77620 0.79429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.99 12.32 55.55 0.68 -20.31 14 2 C 0.04 0.96 4.93 -17.32 -0.09 0.87 14 3 Si 1.06 21.06 30.00 -169.99 -5.10 15.96 14 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 5 H -0.28 -5.31 7.11 56.52 0.40 -4.90 14 6 H -0.28 -5.18 7.11 56.52 0.40 -4.78 14 7 C -0.52 -13.26 8.42 -37.92 -0.32 -13.58 14 8 H 0.07 1.74 6.76 -52.49 -0.35 1.38 14 9 C 0.05 1.26 5.31 -106.62 -0.57 0.69 14 10 C -0.18 -4.67 7.89 -39.30 -0.31 -4.98 14 11 C -0.15 -3.60 9.94 -39.89 -0.40 -4.00 14 12 C -0.01 -0.28 7.31 -39.15 -0.29 -0.57 14 13 F -0.17 -4.00 17.26 2.25 0.04 -3.96 14 14 C -0.20 -4.70 9.86 -39.36 -0.39 -5.09 14 15 C 0.14 3.25 6.79 -83.31 -0.57 2.69 14 16 N -0.88 -17.15 8.98 32.71 0.29 -16.86 14 17 H 0.30 8.08 6.69 -40.82 -0.27 7.81 14 18 H 0.11 2.97 6.49 -52.49 -0.34 2.63 14 19 H 0.10 2.18 8.06 -52.48 -0.42 1.76 14 20 H 0.10 2.09 8.06 -52.49 -0.42 1.67 14 21 H 0.39 7.48 7.06 -40.82 -0.29 7.20 14 22 H 0.38 6.20 8.84 -40.82 -0.36 5.84 14 LS Contribution 202.28 15.07 3.05 3.05 Total: -1.00 -27.35 202.28 -5.21 -32.56 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -1.26 Total: 13.54 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -2.92 Total: -23.97 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.98 Total: -37.17 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.10 Total: 15.96 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -27.35 -5.21 -32.56 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593260.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.361 kcal (2) G-P(sol) polarization free energy of solvation -27.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds