Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34035 * 126.77542 * 2 1 4 4 N 1.20932 * 111.56736 * 180.28552 * 3 2 1 5 5 C 1.30176 * 111.59998 * 359.76343 * 4 3 2 6 6 C 1.35450 * 126.77519 * 179.88833 * 2 1 3 7 7 C 1.50700 * 128.00515 * 0.02562 * 6 2 1 8 8 H 1.08991 * 109.47139 * 359.70116 * 7 6 2 9 9 C 1.53000 * 109.46902 * 239.70018 * 7 6 2 10 10 C 1.50700 * 109.47073 * 119.70735 * 7 6 2 11 11 H 1.08002 * 119.99948 * 5.36639 * 10 7 6 12 12 C 1.37873 * 120.00112 * 185.37503 * 10 7 6 13 13 N 1.31520 * 120.00121 * 185.16317 * 12 10 7 14 14 Si 1.86799 * 119.99961 * 5.15807 * 12 10 7 15 15 H 1.48495 * 109.47400 * 270.00341 * 14 12 10 16 16 H 1.48497 * 109.47076 * 30.00754 * 14 12 10 17 17 H 1.48509 * 109.47012 * 150.00325 * 14 12 10 18 18 H 1.08990 * 109.47593 * 270.11067 * 1 2 3 19 19 H 1.09003 * 109.46570 * 30.11248 * 1 2 3 20 20 H 1.08997 * 109.46935 * 150.10579 * 1 2 3 21 21 H 1.07997 * 126.80264 * 180.02562 * 5 4 3 22 22 H 1.08996 * 109.47341 * 174.96766 * 9 7 6 23 23 H 1.09000 * 109.47428 * 294.96872 * 9 7 6 24 24 H 1.09005 * 109.47152 * 54.96878 * 9 7 6 25 25 H 0.97000 * 119.99738 * 354.99594 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7564 -0.0056 5 6 3.6214 -0.5373 -0.0050 6 6 2.3179 -1.0849 0.0021 7 6 1.9223 -2.5391 0.0044 8 1 0.8354 -2.6199 0.0095 9 6 2.4903 -3.2201 1.2512 10 6 2.4703 -3.2107 -1.2283 11 1 3.1190 -2.6649 -1.8975 12 6 2.1435 -4.5219 -1.5021 13 7 2.7007 -5.1397 -2.5206 14 14 0.9092 -5.4209 -0.4261 15 1 1.6220 -6.0919 0.6904 16 1 -0.0686 -4.4482 0.1243 17 1 0.1927 -6.4374 -1.2379 18 1 -0.3634 0.0020 1.0275 19 1 -0.3632 0.8890 -0.5156 20 1 -0.3633 -0.8909 -0.5122 21 1 4.5528 -1.0840 -0.0088 22 1 2.1307 -4.2479 1.2995 23 1 3.5792 -3.2181 1.2022 24 1 2.1656 -2.6795 2.1403 25 1 3.2856 -4.6528 -3.1221 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328165.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = 44.558774 kcal Electronic energy + Delta-G solvation = -10838.681643 eV Core-core repulsion = 8820.280464 eV Total energy + Delta-G solvation = -2018.401179 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.21509 -35.59311 -32.61259 -32.49777 -30.55834 -27.05290 -24.83501 -23.18816 -21.03317 -19.31793 -17.53334 -16.91693 -16.26610 -14.49890 -13.80830 -13.61737 -12.89174 -12.84817 -12.62917 -12.07050 -11.99246 -11.38912 -10.93925 -10.73914 -10.54043 -9.85720 -9.75380 -9.55218 -8.85651 -8.51377 -8.27597 -6.47647 -4.15209 2.12729 3.05418 3.32972 3.37684 3.53791 3.76775 4.42734 5.03146 5.24000 5.25548 5.63803 5.75639 5.87241 6.03933 6.15742 6.33467 6.38623 6.50655 6.66166 6.88380 6.99049 7.35757 7.97561 8.32036 8.82608 8.89509 9.55350 10.91096 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.054106 B = 0.014266 C = 0.013203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.374062 B = 1962.249191 C = 2120.213827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.077 4.077 3 O 0.081 5.919 4 N -0.386 5.386 5 C -0.001 4.001 6 C -0.133 4.133 7 C 0.074 3.926 8 H 0.040 0.960 9 C -0.142 4.142 10 C -0.587 4.587 11 H 0.056 0.944 12 C 0.027 3.973 13 N -0.911 5.911 14 Si 1.057 2.943 15 H -0.283 1.283 16 H -0.278 1.278 17 H -0.290 1.290 18 H 0.077 0.923 19 H 0.073 0.927 20 H 0.091 0.909 21 H 0.182 0.818 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.028 0.972 25 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 6.286 6.476 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 O 0.016 5.984 4 N -0.092 5.092 5 C -0.179 4.179 6 C -0.137 4.137 7 C 0.054 3.946 8 H 0.058 0.942 9 C -0.199 4.199 10 C -0.625 4.625 11 H 0.075 0.925 12 C -0.177 4.177 13 N -0.546 5.546 14 Si 0.886 3.114 15 H -0.210 1.210 16 H -0.204 1.204 17 H -0.216 1.216 18 H 0.095 0.905 19 H 0.092 0.908 20 H 0.110 0.890 21 H 0.200 0.800 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.585 5.849 6.701 10.007 hybrid contribution 0.705 0.663 -0.375 1.038 sum -3.880 6.512 6.326 9.873 Atomic orbital electron populations 1.20183 0.84751 1.04052 1.03056 1.24127 0.95897 0.85973 1.07982 1.84651 1.11467 1.33465 1.68854 1.73751 0.97460 1.17263 1.20693 1.24837 1.00539 0.89654 1.02840 1.21578 0.91277 0.98437 1.02394 1.17763 0.96665 0.84617 0.95517 0.94187 1.22085 1.01334 0.99441 0.97043 1.21989 1.33160 0.99414 1.07907 0.92533 1.25809 0.98348 0.94865 0.98651 1.70810 1.29918 1.38317 1.15546 0.83827 0.76384 0.75919 0.75244 1.21007 1.20432 1.21645 0.90463 0.90817 0.89018 0.80038 0.93511 0.93027 0.95322 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.17 36.01 0.37 -0.52 15 2 C -0.08 -1.44 7.49 -35.30 -0.26 -1.71 15 3 O 0.08 1.56 11.20 17.19 0.19 1.76 15 4 N -0.39 -7.92 12.07 30.36 0.37 -7.55 15 5 C 0.00 -0.02 11.99 -17.06 -0.20 -0.22 15 6 C -0.13 -2.84 4.87 -104.42 -0.51 -3.35 15 7 C 0.07 1.70 2.27 -92.92 -0.21 1.49 15 8 H 0.04 0.90 5.64 -51.93 -0.29 0.61 15 9 C -0.14 -2.98 8.70 37.16 0.32 -2.66 15 10 C -0.59 -16.08 8.84 -34.44 -0.30 -16.38 15 11 H 0.06 1.70 7.97 -52.49 -0.42 1.28 15 12 C 0.03 0.77 5.43 -17.82 -0.10 0.68 15 13 N -0.91 -27.65 13.70 55.43 0.76 -26.89 15 14 Si 1.06 24.59 25.29 -169.99 -4.30 20.30 15 15 H -0.28 -6.28 6.81 56.52 0.38 -5.90 15 16 H -0.28 -5.88 6.36 56.52 0.36 -5.52 15 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 18 H 0.08 0.91 8.14 -51.93 -0.42 0.49 15 19 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 20 H 0.09 1.33 7.40 -51.93 -0.38 0.95 15 21 H 0.18 3.54 8.06 -52.49 -0.42 3.11 15 22 H 0.05 0.98 4.40 -51.93 -0.23 0.76 15 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 25 H 0.27 8.13 8.72 -40.82 -0.36 7.78 15 LS Contribution 217.02 15.07 3.27 3.27 Total: -1.00 -30.17 217.02 -3.26 -33.43 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -2.65 Total: -1.64 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -0.90 Total: -22.67 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 1.13 Total: -34.45 kcal Atomic # 8 Polarization: 1.56 SS G_CDS: 0.19 Total: 1.76 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -4.30 Total: 20.30 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -30.17 -3.26 -33.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328165.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.989 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds