Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34035 * 126.77542 * 2 1 4 4 N 1.20932 * 111.56736 * 180.28552 * 3 2 1 5 5 C 1.30176 * 111.59998 * 359.76343 * 4 3 2 6 6 C 1.35450 * 126.77519 * 179.88833 * 2 1 3 7 7 C 1.50700 * 128.00515 * 0.02562 * 6 2 1 8 8 H 1.08991 * 109.47139 * 359.70116 * 7 6 2 9 9 C 1.53000 * 109.46902 * 239.70018 * 7 6 2 10 10 C 1.50700 * 109.47073 * 119.70735 * 7 6 2 11 11 H 1.08002 * 119.99948 * 5.36639 * 10 7 6 12 12 C 1.37873 * 120.00112 * 185.37503 * 10 7 6 13 13 N 1.31520 * 120.00121 * 185.16317 * 12 10 7 14 14 Si 1.86799 * 119.99961 * 5.15807 * 12 10 7 15 15 H 1.48495 * 109.47400 * 270.00341 * 14 12 10 16 16 H 1.48497 * 109.47076 * 30.00754 * 14 12 10 17 17 H 1.48509 * 109.47012 * 150.00325 * 14 12 10 18 18 H 1.08990 * 109.47593 * 270.11067 * 1 2 3 19 19 H 1.09003 * 109.46570 * 30.11248 * 1 2 3 20 20 H 1.08997 * 109.46935 * 150.10579 * 1 2 3 21 21 H 1.07997 * 126.80264 * 180.02562 * 5 4 3 22 22 H 1.08996 * 109.47341 * 174.96766 * 9 7 6 23 23 H 1.09000 * 109.47428 * 294.96872 * 9 7 6 24 24 H 1.09005 * 109.47152 * 54.96878 * 9 7 6 25 25 H 0.97000 * 119.99738 * 354.99594 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7564 -0.0056 5 6 3.6214 -0.5373 -0.0050 6 6 2.3179 -1.0849 0.0021 7 6 1.9223 -2.5391 0.0044 8 1 0.8354 -2.6199 0.0095 9 6 2.4903 -3.2201 1.2512 10 6 2.4703 -3.2107 -1.2283 11 1 3.1190 -2.6649 -1.8975 12 6 2.1435 -4.5219 -1.5021 13 7 2.7007 -5.1397 -2.5206 14 14 0.9092 -5.4209 -0.4261 15 1 1.6220 -6.0919 0.6904 16 1 -0.0686 -4.4482 0.1243 17 1 0.1927 -6.4374 -1.2379 18 1 -0.3634 0.0020 1.0275 19 1 -0.3632 0.8890 -0.5156 20 1 -0.3633 -0.8909 -0.5122 21 1 4.5528 -1.0840 -0.0088 22 1 2.1307 -4.2479 1.2995 23 1 3.5792 -3.2181 1.2022 24 1 2.1656 -2.6795 2.1403 25 1 3.2856 -4.6528 -3.1221 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328165.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = 24.677556 kcal Electronic energy + Delta-G solvation = -10839.543758 eV Core-core repulsion = 8820.280464 eV Total energy + Delta-G solvation = -2019.263294 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.79929 -37.34831 -34.55428 -33.97763 -32.32660 -28.39558 -26.77168 -24.94635 -22.66466 -21.03197 -19.59608 -18.50879 -17.80035 -16.29228 -15.40650 -15.35084 -14.61267 -14.33126 -13.88746 -13.82567 -13.38413 -13.18144 -12.64632 -12.34369 -12.22031 -11.60530 -11.49922 -11.18780 -10.84211 -10.62061 -9.89256 -8.70181 -6.39393 0.61024 1.42001 1.48732 1.58146 1.74668 2.32445 2.52164 3.11429 3.43786 3.86486 4.18149 4.32910 4.60412 4.71201 4.77457 4.80550 4.85471 5.04217 5.08999 5.23827 5.35491 5.62667 5.98794 6.03158 6.53868 7.34777 7.41313 8.66398 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.054106 B = 0.014266 C = 0.013203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.374062 B = 1962.249191 C = 2120.213827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.053 4.053 3 O 0.087 5.913 4 N -0.398 5.398 5 C -0.014 4.014 6 C -0.174 4.174 7 C 0.077 3.923 8 H 0.055 0.945 9 C -0.140 4.140 10 C -0.584 4.584 11 H 0.010 0.990 12 C -0.026 4.026 13 N -0.948 5.948 14 Si 1.092 2.908 15 H -0.264 1.264 16 H -0.237 1.237 17 H -0.296 1.296 18 H 0.109 0.891 19 H 0.101 0.899 20 H 0.089 0.911 21 H 0.182 0.818 22 H 0.048 0.952 23 H 0.040 0.960 24 H 0.060 0.940 25 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 6.972 8.437 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.116 4.116 3 O 0.022 5.978 4 N -0.103 5.103 5 C -0.191 4.191 6 C -0.178 4.178 7 C 0.057 3.943 8 H 0.073 0.927 9 C -0.197 4.197 10 C -0.622 4.622 11 H 0.029 0.971 12 C -0.222 4.222 13 N -0.584 5.584 14 Si 0.914 3.086 15 H -0.190 1.190 16 H -0.160 1.160 17 H -0.223 1.223 18 H 0.128 0.872 19 H 0.120 0.880 20 H 0.107 0.893 21 H 0.200 0.800 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.724 6.577 8.673 12.794 hybrid contribution 1.410 0.571 -1.039 1.842 sum -5.314 7.148 7.635 11.731 Atomic orbital electron populations 1.20486 0.81053 1.05287 1.05495 1.24896 0.97709 0.84731 1.04293 1.84642 1.11226 1.33626 1.68260 1.73738 0.98188 1.16946 1.21446 1.24967 1.00963 0.90023 1.03190 1.21529 0.92012 0.98471 1.05768 1.17647 0.97164 0.85435 0.94018 0.92717 1.22008 1.00675 0.99713 0.97297 1.22174 1.31760 0.99424 1.08868 0.97149 1.27361 0.99515 0.96311 0.99053 1.70958 1.31651 1.38694 1.17136 0.83461 0.75104 0.75825 0.74245 1.18993 1.15999 1.22292 0.87238 0.88049 0.89281 0.80042 0.93340 0.94106 0.92084 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.17 71.24 0.72 -0.83 15 2 C -0.05 -1.83 7.49 25.04 0.19 -1.64 15 3 O 0.09 3.18 11.20 71.67 0.80 3.99 15 4 N -0.40 -15.92 12.07 -59.25 -0.72 -16.64 15 5 C -0.01 -0.59 11.99 85.71 1.03 0.44 15 6 C -0.17 -7.16 4.87 -19.73 -0.10 -7.25 15 7 C 0.08 3.39 2.27 -12.29 -0.03 3.36 15 8 H 0.05 2.26 5.64 -2.39 -0.01 2.25 15 9 C -0.14 -5.50 8.70 71.98 0.63 -4.88 15 10 C -0.58 -32.40 8.84 25.60 0.23 -32.18 15 11 H 0.01 0.64 7.97 -2.91 -0.02 0.62 15 12 C -0.03 -1.49 5.43 84.65 0.46 -1.03 15 13 N -0.95 -59.22 13.70 21.45 0.29 -58.93 15 14 Si 1.09 47.55 25.29 68.60 1.73 49.29 15 15 H -0.26 -10.68 6.81 99.48 0.68 -10.01 15 16 H -0.24 -8.66 6.36 99.48 0.63 -8.02 15 17 H -0.30 -13.13 7.11 99.48 0.71 -12.42 15 18 H 0.11 1.96 8.14 -2.39 -0.02 1.94 15 19 H 0.10 1.86 8.14 -2.39 -0.02 1.84 15 20 H 0.09 2.21 7.40 -2.39 -0.02 2.19 15 21 H 0.18 7.28 8.06 -2.91 -0.02 7.25 15 22 H 0.05 1.87 4.40 -2.39 -0.01 1.86 15 23 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 24 H 0.06 2.00 8.14 -2.38 -0.02 1.98 15 25 H 0.25 15.93 8.72 -92.71 -0.81 15.12 15 Total: -1.00 -66.34 217.02 6.29 -60.06 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.04 Total: 6.24 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 3.13 Total: -44.00 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -0.42 Total: -75.57 kcal Atomic # 8 Polarization: 3.18 SS G_CDS: 0.80 Total: 3.99 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.73 Total: 49.29 kcal Total: -66.34 6.29 -60.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328165.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.735 kcal (2) G-P(sol) polarization free energy of solvation -66.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds