Wall clock time and date at job start Mon Mar 30 2020 02:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34325 * 126.44637 * 2 1 4 4 N 1.34478 * 107.66912 * 179.97438 * 3 2 1 5 5 C 1.30253 * 108.70492 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.62368 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47345 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47137 * 60.02435 * 6 5 4 9 9 C 1.50708 * 109.46845 * 300.02302 * 6 5 4 10 10 H 1.07999 * 119.99598 * 5.37793 * 9 6 5 11 11 C 1.37878 * 119.99751 * 185.37279 * 9 6 5 12 12 N 1.31515 * 119.99732 * 185.16737 * 11 9 6 13 13 Si 1.86801 * 119.99997 * 5.16852 * 11 9 6 14 14 H 1.48501 * 109.47187 * 269.99694 * 13 11 9 15 15 H 1.48498 * 109.47105 * 149.99703 * 13 11 9 16 16 H 1.48503 * 109.47042 * 30.00177 * 13 11 9 17 17 O 1.33969 * 108.75889 * 0.22924 * 5 4 3 18 18 H 1.08993 * 109.47472 * 90.02043 * 1 2 3 19 19 H 1.09002 * 109.47131 * 210.02643 * 1 2 3 20 20 H 1.09004 * 109.46512 * 330.02400 * 1 2 3 21 21 H 1.07998 * 126.16789 * 359.94600 * 3 2 1 22 22 H 1.08996 * 109.46887 * 174.97101 * 8 6 5 23 23 H 1.09002 * 109.46645 * 294.96868 * 8 6 5 24 24 H 1.08999 * 109.47259 * 54.96982 * 8 6 5 25 25 H 0.96998 * 119.99818 * 354.99425 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0805 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5765 -0.6549 0.0004 6 6 4.8004 -1.5342 0.0003 7 1 4.4959 -2.5808 -0.0003 8 6 5.6350 -1.2467 1.2499 9 6 5.6232 -1.2497 -1.2299 10 1 5.3399 -0.4477 -1.8954 11 6 6.7377 -2.0132 -1.5055 12 7 7.5130 -1.7022 -2.5213 13 14 7.1463 -3.4894 -0.4362 14 1 8.0226 -3.0619 0.6839 15 1 7.8491 -4.5121 -1.2519 16 1 5.8921 -4.0678 0.1093 17 8 2.3075 -1.0841 -0.0054 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3632 0.8903 0.5135 21 1 1.9822 2.1112 -0.0008 22 1 6.4720 -1.9433 1.2960 23 1 6.0141 -0.2256 1.2066 24 1 5.0136 -1.3662 2.1374 25 1 7.2624 -0.9811 -3.1196 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328168.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:57 Heat of formation + Delta-G solvation = 8.124270 kcal Electronic energy + Delta-G solvation = -10678.504959 eV Core-core repulsion = 8658.523861 eV Total energy + Delta-G solvation = -2019.981098 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.58751 -34.88336 -33.81898 -32.09362 -30.89890 -26.15680 -24.77407 -22.61322 -21.11477 -19.64356 -17.49285 -16.28674 -15.97463 -14.42338 -13.96535 -13.36807 -13.14252 -12.93036 -12.73644 -12.06954 -11.97233 -11.37797 -11.35722 -10.63850 -10.50936 -10.02601 -9.81676 -9.67062 -8.81768 -8.52480 -7.96982 -6.50591 -4.16763 2.12120 3.33614 3.36452 3.39646 3.47866 3.54562 4.42372 4.94183 5.16695 5.23489 5.39112 5.52505 5.67220 5.80974 6.22478 6.30743 6.47690 6.54247 6.68817 6.79249 7.04177 7.30344 7.79472 8.33963 8.59945 8.82390 9.52853 10.89940 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.068784 B = 0.012033 C = 0.011568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.972934 B = 2326.330908 C = 2419.910173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.093 4.093 3 C -0.043 4.043 4 N -0.492 5.492 5 C 0.250 3.750 6 C 0.098 3.902 7 H 0.053 0.947 8 C -0.139 4.139 9 C -0.585 4.585 10 H 0.064 0.936 11 C 0.032 3.968 12 N -0.905 5.905 13 Si 1.054 2.946 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.277 1.277 17 O -0.211 6.211 18 H 0.075 0.925 19 H 0.071 0.929 20 H 0.083 0.917 21 H 0.172 0.828 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.030 0.970 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 0.620 6.463 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.146 4.146 3 C -0.182 4.182 4 N -0.220 5.220 5 C 0.044 3.956 6 C 0.078 3.922 7 H 0.071 0.929 8 C -0.197 4.197 9 C -0.623 4.623 10 H 0.082 0.918 11 C -0.173 4.173 12 N -0.539 5.539 13 Si 0.882 3.118 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.203 1.203 17 O -0.100 6.100 18 H 0.093 0.907 19 H 0.090 0.910 20 H 0.102 0.898 21 H 0.189 0.811 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.933 -0.228 6.684 11.159 hybrid contribution -1.835 1.081 -0.383 2.164 sum -10.768 0.853 6.301 12.505 Atomic orbital electron populations 1.20082 0.85015 1.03390 1.02948 1.23186 0.94670 0.85447 1.11301 1.23036 0.88826 0.99656 1.06681 1.70485 1.21457 1.09942 1.20067 1.27236 0.83320 0.90558 0.94475 1.18058 0.84144 0.92503 0.97499 0.92922 1.22074 0.99141 1.02786 0.95717 1.21884 1.12963 1.19797 1.07658 0.91762 1.25793 0.92196 1.00680 0.98658 1.70796 1.36419 1.31131 1.15568 0.83881 0.76467 0.75990 0.75419 1.20634 1.21311 1.20336 1.84415 1.18679 1.36546 1.70378 0.90668 0.91024 0.89808 0.81105 0.92630 0.91694 0.95068 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.43 36.00 0.38 -0.30 15 2 C -0.09 -1.67 7.39 -35.69 -0.26 -1.93 15 3 C -0.04 -0.83 11.80 -17.77 -0.21 -1.04 15 4 N -0.49 -11.67 11.29 -11.10 -0.13 -11.79 15 5 C 0.25 6.02 6.79 -12.95 -0.09 5.93 15 6 C 0.10 2.44 2.35 -92.92 -0.22 2.23 15 7 H 0.05 1.27 6.65 -51.93 -0.35 0.93 15 8 C -0.14 -3.10 8.76 37.16 0.33 -2.78 15 9 C -0.58 -16.86 8.90 -34.44 -0.31 -17.17 15 10 H 0.06 2.05 7.97 -52.49 -0.42 1.64 15 11 C 0.03 0.91 5.43 -17.82 -0.10 0.81 15 12 N -0.91 -27.90 13.70 55.43 0.76 -27.14 15 13 Si 1.05 24.85 25.29 -169.99 -4.30 20.55 15 14 H -0.28 -6.20 6.81 56.52 0.38 -5.82 15 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 16 H -0.28 -6.00 6.36 56.52 0.36 -5.64 15 17 O -0.21 -4.60 10.78 5.33 0.06 -4.55 15 18 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 19 H 0.07 0.77 8.14 -51.93 -0.42 0.34 15 20 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.17 2.58 8.06 -52.49 -0.42 2.16 15 22 H 0.06 1.20 4.40 -51.93 -0.23 0.97 15 23 H 0.06 1.50 8.14 -51.93 -0.42 1.07 15 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 15 25 H 0.27 8.35 8.72 -40.82 -0.36 7.99 15 LS Contribution 219.69 15.07 3.31 3.31 Total: -1.00 -32.18 219.69 -3.52 -35.70 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -2.74 Total: -1.83 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.48 Total: -14.25 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.63 Total: -38.94 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: 0.06 Total: -4.55 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -4.30 Total: 20.55 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -32.18 -3.52 -35.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328168.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.826 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds