Wall clock time and date at job start Mon Mar 30 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34325 * 126.44637 * 2 1 4 4 N 1.34478 * 107.66912 * 179.97438 * 3 2 1 5 5 C 1.30253 * 108.70492 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.62368 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47345 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47137 * 60.02435 * 6 5 4 9 9 C 1.50708 * 109.46845 * 300.02302 * 6 5 4 10 10 H 1.07999 * 119.99598 * 5.37793 * 9 6 5 11 11 C 1.37878 * 119.99751 * 185.37279 * 9 6 5 12 12 N 1.31515 * 119.99732 * 185.16737 * 11 9 6 13 13 Si 1.86801 * 119.99997 * 5.16852 * 11 9 6 14 14 H 1.48501 * 109.47187 * 269.99694 * 13 11 9 15 15 H 1.48498 * 109.47105 * 149.99703 * 13 11 9 16 16 H 1.48503 * 109.47042 * 30.00177 * 13 11 9 17 17 O 1.33969 * 108.75889 * 0.22924 * 5 4 3 18 18 H 1.08993 * 109.47472 * 90.02043 * 1 2 3 19 19 H 1.09002 * 109.47131 * 210.02643 * 1 2 3 20 20 H 1.09004 * 109.46512 * 330.02400 * 1 2 3 21 21 H 1.07998 * 126.16789 * 359.94600 * 3 2 1 22 22 H 1.08996 * 109.46887 * 174.97101 * 8 6 5 23 23 H 1.09002 * 109.46645 * 294.96868 * 8 6 5 24 24 H 1.08999 * 109.47259 * 54.96982 * 8 6 5 25 25 H 0.96998 * 119.99818 * 354.99425 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0805 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5765 -0.6549 0.0004 6 6 4.8004 -1.5342 0.0003 7 1 4.4959 -2.5808 -0.0003 8 6 5.6350 -1.2467 1.2499 9 6 5.6232 -1.2497 -1.2299 10 1 5.3399 -0.4477 -1.8954 11 6 6.7377 -2.0132 -1.5055 12 7 7.5130 -1.7022 -2.5213 13 14 7.1463 -3.4894 -0.4362 14 1 8.0226 -3.0619 0.6839 15 1 7.8491 -4.5121 -1.2519 16 1 5.8921 -4.0678 0.1093 17 8 2.3075 -1.0841 -0.0054 18 1 -0.3634 -0.0004 -1.0276 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3632 0.8903 0.5135 21 1 1.9822 2.1112 -0.0008 22 1 6.4720 -1.9433 1.2960 23 1 6.0141 -0.2256 1.2066 24 1 5.0136 -1.3662 2.1374 25 1 7.2624 -0.9811 -3.1196 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328168.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:56 Heat of formation + Delta-G solvation = -16.912737 kcal Electronic energy + Delta-G solvation = -10679.590645 eV Core-core repulsion = 8658.523861 eV Total energy + Delta-G solvation = -2021.066784 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.20260 -36.81011 -35.50618 -33.90628 -32.49453 -27.58143 -26.80791 -24.38569 -22.67452 -21.45788 -19.65022 -17.96000 -17.60529 -16.12446 -15.54526 -15.07726 -14.84002 -14.21376 -14.15741 -13.79294 -13.28881 -13.22949 -13.08246 -12.47618 -12.22876 -11.83743 -11.58952 -11.34960 -10.95930 -10.70297 -9.53002 -8.80074 -6.49510 0.56700 1.46256 1.57130 1.73103 1.81735 1.85054 2.47477 3.02768 3.38948 3.93881 4.12806 4.30630 4.49169 4.59396 4.67226 4.69339 4.82131 4.96695 5.16999 5.23851 5.34660 5.53762 5.73323 5.93631 6.42534 6.95637 7.30505 8.57234 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.068784 B = 0.012033 C = 0.011568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.972934 B = 2326.330908 C = 2419.910173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.073 4.073 3 C -0.070 4.070 4 N -0.521 5.521 5 C 0.212 3.788 6 C 0.096 3.904 7 H 0.064 0.936 8 C -0.132 4.132 9 C -0.589 4.589 10 H 0.012 0.988 11 C -0.019 4.019 12 N -0.936 5.936 13 Si 1.092 2.908 14 H -0.253 1.253 15 H -0.287 1.287 16 H -0.242 1.242 17 O -0.222 6.222 18 H 0.093 0.907 19 H 0.086 0.914 20 H 0.118 0.882 21 H 0.207 0.793 22 H 0.064 0.936 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 -0.163 8.379 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.126 4.126 3 C -0.208 4.208 4 N -0.250 5.250 5 C 0.006 3.994 6 C 0.076 3.924 7 H 0.082 0.918 8 C -0.190 4.190 9 C -0.628 4.628 10 H 0.030 0.970 11 C -0.216 4.216 12 N -0.571 5.571 13 Si 0.911 3.089 14 H -0.178 1.178 15 H -0.214 1.214 16 H -0.166 1.166 17 O -0.110 6.110 18 H 0.111 0.889 19 H 0.105 0.895 20 H 0.136 0.864 21 H 0.224 0.776 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.847 -0.987 8.607 13.883 hybrid contribution -1.427 1.472 -1.051 2.304 sum -12.274 0.485 7.557 14.422 Atomic orbital electron populations 1.20444 0.80174 1.05850 1.04794 1.24413 0.96962 0.83996 1.07191 1.23658 0.87411 1.01870 1.07854 1.70397 1.24368 1.10263 1.19988 1.26896 0.84044 0.90714 0.97785 1.17932 0.84658 0.93351 0.96504 0.91793 1.21949 0.99460 1.01867 0.95702 1.21952 1.13982 1.18136 1.08684 0.96959 1.27449 0.91868 1.03241 0.99018 1.70942 1.37794 1.31455 1.16958 0.83494 0.78373 0.72384 0.74647 1.17804 1.21392 1.16607 1.84398 1.18296 1.37985 1.70351 0.88880 0.89542 0.86374 0.77606 0.91693 0.93532 0.91844 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.43 71.23 0.74 -0.32 15 2 C -0.07 -2.44 7.39 24.79 0.18 -2.25 15 3 C -0.07 -2.58 11.80 83.39 0.98 -1.60 15 4 N -0.52 -24.80 11.29 -303.83 -3.43 -28.23 15 5 C 0.21 10.17 6.79 88.34 0.60 10.77 15 6 C 0.10 4.73 2.35 -12.28 -0.03 4.70 15 7 H 0.06 2.98 6.65 -2.39 -0.02 2.97 15 8 C -0.13 -5.68 8.76 71.98 0.63 -5.05 15 9 C -0.59 -35.08 8.90 25.60 0.23 -34.85 15 10 H 0.01 0.82 7.97 -2.91 -0.02 0.80 15 11 C -0.02 -1.09 5.43 84.65 0.46 -0.63 15 12 N -0.94 -59.72 13.70 21.45 0.29 -59.42 15 13 Si 1.09 48.58 25.29 68.60 1.73 50.32 15 14 H -0.25 -10.19 6.81 99.48 0.68 -9.51 15 15 H -0.29 -12.79 7.11 99.48 0.71 -12.09 15 16 H -0.24 -9.37 6.36 99.48 0.63 -8.74 15 17 O -0.22 -9.37 10.78 -3.84 -0.04 -9.41 15 18 H 0.09 1.54 8.14 -2.39 -0.02 1.52 15 19 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.12 1.50 8.14 -2.38 -0.02 1.48 15 21 H 0.21 5.69 8.06 -2.91 -0.02 5.67 15 22 H 0.06 2.62 4.40 -2.39 -0.01 2.61 15 23 H 0.05 2.13 8.14 -2.39 -0.02 2.11 15 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.25 16.43 8.72 -92.71 -0.81 15.62 15 Total: -1.00 -73.24 219.69 3.39 -69.85 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.04 Total: 6.14 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 3.80 Total: -29.24 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -3.14 Total: -87.65 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.04 Total: -9.41 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.73 Total: 50.32 kcal Total: -73.24 3.39 -69.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328168.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.936 kcal (2) G-P(sol) polarization free energy of solvation -73.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds