Wall clock time and date at job start Mon Mar 30 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34474 * 126.16982 * 2 1 4 4 C 1.30254 * 108.70603 * 180.02562 * 3 2 1 5 5 O 1.33969 * 108.75768 * 359.73123 * 4 3 2 6 6 C 1.34338 * 126.16527 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.43727 * 359.97438 * 6 2 1 8 8 H 1.08997 * 109.47656 * 359.97438 * 7 6 2 9 9 C 1.52995 * 109.46804 * 120.00178 * 7 6 2 10 10 C 1.50697 * 109.46802 * 239.99801 * 7 6 2 11 11 H 1.07997 * 120.00368 * 354.36241 * 10 7 6 12 12 C 1.37881 * 120.00111 * 174.36511 * 10 7 6 13 13 N 1.31509 * 120.00634 * 156.87207 * 12 10 7 14 14 Si 1.86800 * 119.99547 * 336.86825 * 12 10 7 15 15 H 1.48507 * 109.47234 * 180.02562 * 14 12 10 16 16 H 1.48495 * 109.47228 * 60.00401 * 14 12 10 17 17 H 1.48501 * 109.47518 * 300.00043 * 14 12 10 18 18 H 1.09003 * 109.47306 * 270.00388 * 1 2 3 19 19 H 1.09000 * 109.46912 * 29.99807 * 1 2 3 20 20 H 1.08999 * 109.47580 * 149.99999 * 1 2 3 21 21 H 1.08000 * 125.62623 * 180.02562 * 4 3 2 22 22 H 1.09003 * 109.47433 * 53.17021 * 9 7 6 23 23 H 1.09003 * 109.47338 * 173.16918 * 9 7 6 24 24 H 1.08997 * 109.47662 * 293.17190 * 9 7 6 25 25 H 0.97004 * 119.99341 * 354.92861 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 -0.0006 5 8 3.5734 -0.6447 0.0050 6 6 2.2997 -1.0845 0.0005 7 6 1.8491 -2.5226 0.0017 8 1 0.7599 -2.5622 0.0026 9 6 2.3845 -3.2257 -1.2472 10 6 2.3773 -3.2134 1.2324 11 1 3.0530 -2.6936 1.8954 12 6 1.9980 -4.5092 1.5120 13 7 2.7558 -5.2661 2.2752 14 14 0.4076 -5.1896 0.8069 15 1 0.2292 -6.5946 1.2535 16 1 0.4646 -5.1446 -0.6763 17 1 -0.7356 -4.3703 1.2835 18 1 -0.3634 0.0001 1.0277 19 1 -0.3633 0.8900 -0.5138 20 1 -0.3634 -0.8900 -0.5138 21 1 4.4066 1.3433 -0.0003 22 1 3.4631 -3.0820 -1.3109 23 1 2.1629 -4.2913 -1.1875 24 1 1.9090 -2.8049 -2.1332 25 1 3.6162 -4.9389 2.5810 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328170.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:33 Heat of formation + Delta-G solvation = -18.030455 kcal Electronic energy + Delta-G solvation = -10842.872285 eV Core-core repulsion = 8821.757033 eV Total energy + Delta-G solvation = -2021.115252 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.18083 -36.69876 -35.97928 -33.84467 -31.45025 -28.00824 -26.86172 -24.29599 -22.50359 -21.20967 -19.63096 -17.90385 -17.46592 -16.21942 -15.78678 -15.27812 -14.58247 -14.16901 -14.07070 -13.87682 -13.23888 -13.20850 -12.74661 -12.39056 -11.95071 -11.88616 -11.73282 -11.39178 -11.18750 -10.46533 -9.50068 -8.78229 -6.43560 0.69613 1.50045 1.56922 1.74700 1.76793 2.08792 2.50215 2.96333 3.39464 3.99854 4.07019 4.40462 4.64134 4.66495 4.78912 4.85673 4.90665 5.02819 5.13524 5.29387 5.49446 5.57132 5.87701 5.97198 6.44946 6.83357 7.31822 8.53446 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.052660 B = 0.014864 C = 0.013286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.581485 B = 1883.231159 C = 2106.933510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.061 4.061 3 N -0.508 5.508 4 C 0.148 3.852 5 O -0.222 6.222 6 C -0.010 4.010 7 C 0.090 3.910 8 H 0.072 0.928 9 C -0.140 4.140 10 C -0.614 4.614 11 H 0.007 0.993 12 C -0.008 4.008 13 N -0.924 5.924 14 Si 1.074 2.926 15 H -0.287 1.287 16 H -0.236 1.236 17 H -0.255 1.255 18 H 0.072 0.928 19 H 0.086 0.914 20 H 0.084 0.916 21 H 0.291 0.709 22 H 0.033 0.967 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 7.586 -7.381 11.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.179 4.179 3 N -0.238 5.238 4 C -0.078 4.078 5 O -0.108 6.108 6 C -0.063 4.063 7 C 0.071 3.929 8 H 0.089 0.911 9 C -0.197 4.197 10 C -0.651 4.651 11 H 0.026 0.974 12 C -0.208 4.208 13 N -0.558 5.558 14 Si 0.892 3.108 15 H -0.213 1.213 16 H -0.160 1.160 17 H -0.179 1.179 18 H 0.091 0.909 19 H 0.104 0.896 20 H 0.103 0.897 21 H 0.306 0.694 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.055 6.873 -7.363 11.270 hybrid contribution 2.137 0.751 0.709 2.373 sum -2.919 7.624 -6.655 10.532 Atomic orbital electron populations 1.20145 0.84856 1.03955 1.03131 1.21915 0.99351 0.87311 1.09323 1.70215 1.02235 1.32034 1.19286 1.28945 0.98446 0.79325 1.01085 1.84428 1.31239 1.25461 1.69693 1.23873 0.80359 0.98873 1.03187 1.17792 0.96980 0.83036 0.95064 0.91062 1.22074 1.00136 1.00647 0.96875 1.21877 1.32248 1.00662 1.10290 0.97427 1.27338 1.04952 0.93437 0.95040 1.70980 1.11104 1.37733 1.35950 0.83735 0.72419 0.76099 0.78512 1.21312 1.15994 1.17921 0.90947 0.89552 0.89722 0.69392 0.94743 0.92489 0.91959 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.98 10.07 71.23 0.72 -1.26 15 2 C -0.06 -2.41 7.11 41.26 0.29 -2.11 15 3 N -0.51 -19.09 11.29 -304.07 -3.43 -22.53 15 4 C 0.15 4.96 13.23 130.48 1.73 6.68 15 5 O -0.22 -9.53 10.78 -3.70 -0.04 -9.57 15 6 C -0.01 -0.44 5.83 24.79 0.14 -0.29 15 7 C 0.09 4.21 2.25 -12.29 -0.03 4.18 15 8 H 0.07 3.04 5.39 -2.39 -0.01 3.03 15 9 C -0.14 -5.87 8.90 71.98 0.64 -5.23 15 10 C -0.61 -35.09 8.75 25.60 0.22 -34.86 15 11 H 0.01 0.48 7.99 -2.91 -0.02 0.46 15 12 C -0.01 -0.46 5.19 84.66 0.44 -0.02 15 13 N -0.92 -57.22 13.70 21.45 0.29 -56.93 15 14 Si 1.07 46.57 26.44 68.60 1.81 48.39 15 15 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 16 H -0.24 -8.82 6.15 99.48 0.61 -8.20 15 17 H -0.25 -10.02 7.11 99.48 0.71 -9.31 15 18 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 19 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 20 H 0.08 2.38 7.16 -2.39 -0.02 2.36 15 21 H 0.29 5.79 8.06 -2.91 -0.02 5.77 15 22 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.06 2.39 5.48 -2.39 -0.01 2.38 15 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.25 16.07 8.73 -92.70 -0.81 15.26 15 Total: -1.00 -69.59 219.27 3.84 -65.74 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.05 Total: 7.80 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 4.16 Total: -32.91 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -3.14 Total: -79.45 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.04 Total: -9.57 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.81 Total: 48.39 kcal Total: -69.59 3.84 -65.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328170.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.713 kcal (2) G-P(sol) polarization free energy of solvation -69.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds