Wall clock time and date at job start Mon Mar 30 2020 02:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34476 * 126.17109 * 2 1 4 4 C 1.30255 * 108.70544 * 180.02562 * 3 2 1 5 5 O 1.33967 * 108.75938 * 359.97438 * 4 3 2 6 6 C 1.34334 * 126.16382 * 180.02562 * 2 1 3 7 7 C 1.50705 * 126.43970 * 359.73584 * 6 2 1 8 8 H 1.08997 * 109.47085 * 359.97438 * 7 6 2 9 9 C 1.53005 * 109.46735 * 239.99981 * 7 6 2 10 10 C 1.50701 * 109.46952 * 120.00425 * 7 6 2 11 11 H 1.07996 * 119.99978 * 359.97438 * 10 7 6 12 12 C 1.37881 * 119.99605 * 179.97438 * 10 7 6 13 13 N 1.31508 * 120.00305 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 119.99538 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47105 * 90.00517 * 14 12 10 16 16 H 1.48500 * 109.47009 * 209.99826 * 14 12 10 17 17 H 1.48501 * 109.47389 * 329.99711 * 14 12 10 18 18 H 1.09001 * 109.47039 * 270.00128 * 1 2 3 19 19 H 1.09004 * 109.47236 * 29.99231 * 1 2 3 20 20 H 1.09002 * 109.47793 * 150.00109 * 1 2 3 21 21 H 1.07995 * 125.61771 * 180.02562 * 4 3 2 22 22 H 1.08993 * 109.47314 * 59.99963 * 9 7 6 23 23 H 1.08997 * 109.46845 * 180.02562 * 9 7 6 24 24 H 1.09005 * 109.46839 * 299.99912 * 9 7 6 25 25 H 0.96999 * 120.00386 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6946 -0.0006 5 8 3.5734 -0.6447 -0.0003 6 6 2.2997 -1.0845 -0.0005 7 6 1.8491 -2.5226 0.0045 8 1 0.7598 -2.5621 0.0091 9 6 2.3896 -3.2220 1.2534 10 6 2.3723 -3.2172 -1.2263 11 1 2.9709 -2.6717 -1.9409 12 6 2.0869 -4.5491 -1.4401 13 7 1.3585 -5.2134 -0.5698 14 14 2.7349 -5.4098 -2.9661 15 1 4.0667 -5.9983 -2.6745 16 1 1.7939 -6.4876 -3.3637 17 1 2.8591 -4.4279 -4.0732 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8901 -0.5137 20 1 -0.3635 -0.8900 -0.5138 21 1 4.4066 1.3433 -0.0003 22 1 2.0112 -2.7197 2.1436 23 1 2.0641 -4.2623 1.2567 24 1 3.4789 -3.1825 1.2491 25 1 1.1573 -6.1503 -0.7204 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328171.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:35 Heat of formation + Delta-G solvation = 5.204567 kcal Electronic energy + Delta-G solvation = -10796.588834 eV Core-core repulsion = 8776.481128 eV Total energy + Delta-G solvation = -2020.107706 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.48985 -34.68401 -34.28204 -31.57113 -29.49446 -26.26641 -25.25519 -22.63644 -20.80450 -19.55961 -16.59796 -16.18284 -15.59345 -14.80549 -14.03133 -13.34153 -12.73825 -12.65112 -12.29525 -11.65319 -11.48384 -11.04339 -10.93344 -10.61514 -10.30363 -10.28105 -10.21564 -9.54893 -9.21052 -8.51594 -7.69195 -6.13971 -4.22077 2.39040 3.25080 3.31509 3.35087 3.41425 3.69491 4.34650 4.83534 5.17160 5.65142 5.76827 6.16063 6.23528 6.37383 6.57037 6.68776 6.81810 6.96242 7.03859 7.12988 7.51223 7.71291 7.91708 8.16427 8.49878 8.78442 9.43256 10.91463 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.053034 B = 0.013168 C = 0.012524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.839319 B = 2125.820135 C = 2235.083116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.071 4.071 3 N -0.487 5.487 4 C 0.119 3.881 5 O -0.198 6.198 6 C 0.035 3.965 7 C 0.113 3.887 8 H 0.064 0.936 9 C -0.137 4.137 10 C -0.516 4.516 11 H 0.058 0.942 12 C 0.065 3.935 13 N -0.888 5.888 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.076 0.924 21 H 0.236 0.764 22 H 0.012 0.988 23 H 0.093 0.907 24 H 0.032 0.968 25 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 5.501 1.227 5.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.190 4.190 3 N -0.217 5.217 4 C -0.107 4.107 5 O -0.083 6.083 6 C -0.019 4.019 7 C 0.095 3.905 8 H 0.082 0.918 9 C -0.194 4.194 10 C -0.554 4.554 11 H 0.076 0.924 12 C -0.137 4.137 13 N -0.527 5.527 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 H 0.080 0.920 19 H 0.081 0.919 20 H 0.095 0.905 21 H 0.252 0.748 22 H 0.032 0.968 23 H 0.112 0.888 24 H 0.051 0.949 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.897 5.917 1.257 6.115 hybrid contribution 0.775 -0.970 -0.822 1.490 sum 1.672 4.947 0.435 5.240 Atomic orbital electron populations 1.19957 0.87286 1.02642 1.01767 1.21345 0.97687 0.87795 1.12142 1.70124 1.01547 1.32449 1.17600 1.27580 0.97153 0.80438 1.05522 1.84457 1.31331 1.23452 1.69102 1.24593 0.79329 0.99600 0.98331 1.17703 0.96995 0.79850 0.96000 0.91798 1.21806 0.99108 1.03809 0.94713 1.20998 1.33593 0.95313 1.05530 0.92369 1.24924 0.94789 0.97128 0.96844 1.69854 1.37721 1.09905 1.35176 0.86469 0.78766 0.79217 0.82900 1.20476 1.20979 1.19818 0.91954 0.91872 0.90479 0.74763 0.96848 0.88830 0.94881 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.07 36.00 0.36 -0.70 15 2 C -0.07 -1.52 7.11 -82.81 -0.59 -2.11 15 3 N -0.49 -9.94 11.29 -11.18 -0.13 -10.07 15 4 C 0.12 2.17 13.23 52.09 0.69 2.86 15 5 O -0.20 -4.35 10.78 5.36 0.06 -4.29 15 6 C 0.04 0.82 5.83 -35.68 -0.21 0.62 15 7 C 0.11 2.83 2.65 -92.92 -0.25 2.59 15 8 H 0.06 1.64 6.82 -51.93 -0.35 1.28 15 9 C -0.14 -3.29 8.95 37.16 0.33 -2.96 15 10 C -0.52 -14.13 8.55 -34.44 -0.29 -14.43 15 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 12 C 0.07 1.76 5.30 -17.82 -0.09 1.67 15 13 N -0.89 -24.41 11.32 55.43 0.63 -23.79 15 14 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 18 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 19 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.08 1.39 7.17 -51.93 -0.37 1.02 15 21 H 0.24 2.86 8.06 -52.49 -0.42 2.44 15 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 15 23 H 0.09 2.41 6.07 -51.93 -0.32 2.09 15 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 LS Contribution 222.66 15.07 3.36 3.36 Total: -1.00 -29.59 222.66 -3.85 -33.44 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -2.70 Total: -2.14 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.05 Total: -12.46 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.50 Total: -33.85 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: 0.06 Total: -4.29 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -29.59 -3.85 -33.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328171.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.642 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds