Wall clock time and date at job start Mon Mar 30 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47033 * 2 1 4 4 O 1.42894 * 109.47190 * 239.99549 * 2 1 3 5 5 C 1.50702 * 109.46886 * 119.99756 * 2 1 3 6 6 C 1.34800 * 125.91086 * 84.69289 * 5 2 1 7 7 C 1.41176 * 107.51075 * 180.26317 * 6 5 2 8 8 C 1.34810 * 107.50522 * 359.97438 * 7 6 5 9 9 N 1.36842 * 108.18522 * 359.97438 * 8 7 6 10 10 C 1.37501 * 125.69347 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00062 * 199.51469 * 10 9 8 12 12 C 1.38917 * 119.99465 * 19.51097 * 10 9 8 13 13 N 1.31360 * 120.00465 * 10.33369 * 12 10 9 14 14 Si 1.86797 * 119.99813 * 190.32740 * 12 10 9 15 15 H 1.48503 * 109.47374 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47160 * 120.00215 * 14 12 10 17 17 H 1.48494 * 109.47654 * 240.00293 * 14 12 10 18 18 H 1.08996 * 109.47294 * 299.99877 * 1 2 3 19 19 H 1.08993 * 109.47358 * 60.00787 * 1 2 3 20 20 H 1.09009 * 109.46750 * 180.02562 * 1 2 3 21 21 H 0.96697 * 114.00248 * 299.99792 * 4 2 1 22 22 H 1.08001 * 126.24280 * 0.22668 * 6 5 2 23 23 H 1.07994 * 126.24394 * 180.02562 * 7 6 5 24 24 H 1.07997 * 125.90142 * 179.97438 * 8 7 6 25 25 H 0.96998 * 119.99770 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 6 2.2006 -2.0414 1.3617 7 6 2.6801 -2.2822 2.6675 8 6 2.7878 -1.0894 3.2864 9 7 2.3922 -0.1161 2.4096 10 6 2.3598 1.2336 2.6703 11 1 1.7544 1.8871 2.0598 12 6 3.1058 1.7564 3.7191 13 7 3.9937 1.0065 4.3314 14 14 2.8465 3.5258 4.2586 15 1 1.7969 4.1518 3.4149 16 1 2.4189 3.5522 5.6805 17 1 4.1169 4.2801 4.1097 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0278 0.0005 21 1 1.7210 -1.5953 -1.2327 22 1 2.0038 -2.7874 0.6060 23 1 2.9180 -3.2460 3.0927 24 1 3.1276 -0.9297 4.2990 25 1 4.5148 1.3718 5.0635 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085833327.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:31 Heat of formation + Delta-G solvation = -13.847849 kcal Electronic energy + Delta-G solvation = -10861.894455 eV Core-core repulsion = 8840.960574 eV Total energy + Delta-G solvation = -2020.933880 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.73508 -36.38992 -33.39867 -30.62072 -29.85783 -26.67366 -24.79400 -22.31930 -19.61632 -18.64046 -17.63065 -15.74704 -14.98568 -14.51413 -14.26523 -13.14802 -13.07536 -12.49564 -11.93092 -11.83623 -11.56252 -11.36621 -11.23937 -10.60170 -10.54582 -10.38394 -10.10945 -9.52947 -9.24179 -7.58565 -6.73216 -6.42774 -4.33541 2.94937 3.05216 3.10371 3.75173 3.88684 4.42584 4.95217 5.04222 5.23222 5.79113 5.88085 5.93286 6.41036 6.54164 6.61569 6.70566 6.99880 7.09329 7.25927 7.67730 7.75207 7.94234 8.22990 8.57641 8.64187 9.22601 9.65616 10.34840 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.045490 B = 0.015749 C = 0.012636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.367758 B = 1777.499690 C = 2215.310211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.186 3.814 3 H 0.095 0.905 4 O -0.562 6.562 5 C -0.087 4.087 6 C -0.224 4.224 7 C -0.264 4.264 8 C 0.002 3.998 9 N -0.247 5.247 10 C -0.348 4.348 11 H 0.104 0.896 12 C 0.045 3.955 13 N -0.843 5.843 14 Si 0.936 3.064 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.275 1.275 18 H 0.063 0.937 19 H 0.053 0.947 20 H 0.055 0.945 21 H 0.369 0.631 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.161 0.839 25 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 0.332 -2.813 5.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.127 3.873 3 H 0.112 0.888 4 O -0.366 6.366 5 C -0.203 4.203 6 C -0.250 4.250 7 C -0.288 4.288 8 C -0.136 4.136 9 N 0.094 4.906 10 C -0.476 4.476 11 H 0.122 0.878 12 C -0.164 4.164 13 N -0.474 5.474 14 Si 0.761 3.239 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.201 1.201 18 H 0.083 0.917 19 H 0.072 0.928 20 H 0.074 0.926 21 H 0.215 0.785 22 H 0.123 0.877 23 H 0.126 0.874 24 H 0.178 0.822 25 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.834 1.330 -2.695 4.871 hybrid contribution -0.179 0.175 0.581 0.633 sum -4.013 1.504 -2.113 4.779 Atomic orbital electron populations 1.22423 0.96892 1.02023 1.01577 1.19833 0.91384 0.95087 0.81008 0.88753 1.86516 1.78029 1.28707 1.43328 1.20498 1.16824 0.93057 0.89958 1.19946 1.13781 0.93376 0.97898 1.20430 1.15558 0.96404 0.96359 1.21938 1.08407 0.86048 0.97247 1.40147 1.38126 1.05075 1.07207 1.19915 1.29027 0.81912 1.16732 0.87809 1.25511 0.93659 1.01009 0.96262 1.69943 1.19017 1.37337 1.21127 0.85725 0.78810 0.80400 0.78981 1.18795 1.19922 1.20060 0.91748 0.92831 0.92575 0.78459 0.87736 0.87440 0.82164 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.52 37.16 0.35 -2.62 15 2 C 0.19 3.88 3.78 -27.88 -0.11 3.78 15 3 H 0.09 2.07 7.39 -51.93 -0.38 1.69 15 4 O -0.56 -10.93 13.21 -35.23 -0.47 -11.39 15 5 C -0.09 -2.15 5.93 -81.57 -0.48 -2.63 15 6 C -0.22 -5.36 10.21 -39.69 -0.41 -5.77 15 7 C -0.26 -6.62 10.86 -39.68 -0.43 -7.05 15 8 C 0.00 0.06 10.05 -16.53 -0.17 -0.11 15 9 N -0.25 -6.73 2.91 -57.81 -0.17 -6.90 15 10 C -0.35 -9.33 9.60 -14.76 -0.14 -9.47 15 11 H 0.10 2.61 7.33 -52.49 -0.38 2.23 15 12 C 0.04 1.15 5.37 -17.50 -0.09 1.06 15 13 N -0.84 -22.68 10.83 55.49 0.60 -22.08 15 14 Si 0.94 19.40 29.56 -169.99 -5.03 14.37 15 15 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 17 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 18 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 19 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 20 H 0.06 0.91 8.14 -51.92 -0.42 0.49 15 21 H 0.37 5.83 8.18 45.56 0.37 6.21 15 22 H 0.10 2.15 7.56 -52.49 -0.40 1.76 15 23 H 0.11 2.42 8.06 -52.49 -0.42 1.99 15 24 H 0.16 4.44 6.35 -52.49 -0.33 4.11 15 25 H 0.28 6.84 8.31 -40.82 -0.34 6.50 15 LS Contribution 220.76 15.07 3.33 3.33 Total: -1.00 -29.58 220.76 -5.16 -34.73 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -1.95 Total: 10.76 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -1.47 Total: -22.81 kcal Atomic # 7 Polarization: -29.42 SS G_CDS: 0.43 Total: -28.98 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.47 Total: -11.39 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -29.58 -5.16 -34.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085833327.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.884 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds