Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46816 * 2 1 4 4 O 1.42899 * 109.47084 * 119.99129 * 2 1 3 5 5 C 1.50694 * 109.47517 * 239.99833 * 2 1 3 6 6 C 1.41179 * 126.24293 * 279.69355 * 5 2 1 7 7 C 1.34811 * 107.50464 * 179.82409 * 6 5 2 8 8 N 1.36846 * 108.18574 * 0.43119 * 7 6 5 9 9 C 1.37497 * 125.69714 * 179.70159 * 8 7 6 10 10 H 1.07992 * 120.00447 * 199.23615 * 9 8 7 11 11 C 1.38918 * 119.99349 * 19.23179 * 9 8 7 12 12 N 1.31359 * 120.00442 * 10.47241 * 11 9 8 13 13 Si 1.86800 * 120.00081 * 190.46455 * 11 9 8 14 14 H 1.48507 * 109.46819 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47285 * 120.00189 * 13 11 9 16 16 H 1.48498 * 109.47438 * 240.00805 * 13 11 9 17 17 C 1.34806 * 126.24688 * 99.99236 * 5 2 1 18 18 H 1.09002 * 109.47200 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47295 * 300.00411 * 1 2 3 20 20 H 1.09009 * 109.47300 * 60.00428 * 1 2 3 21 21 H 0.96692 * 114.00492 * 300.00461 * 4 2 1 22 22 H 1.07993 * 126.24621 * 359.97438 * 6 5 2 23 23 H 1.07993 * 125.90388 * 180.16833 * 7 6 5 24 24 H 0.97005 * 120.00425 * 179.97438 * 12 11 9 25 25 H 1.07992 * 125.90920 * 0.02562 * 17 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0323 -0.7104 -1.2304 6 6 2.1299 -2.1078 -1.4060 7 6 2.6206 -2.3279 -2.6422 8 7 2.8402 -1.1150 -3.2366 9 6 3.3434 -0.9209 -4.5014 10 1 3.7694 0.0338 -4.7725 11 6 3.3037 -1.9528 -5.4306 12 7 2.6082 -3.0381 -5.1776 13 14 4.2392 -1.7971 -7.0399 14 1 4.9386 -0.4877 -7.0812 15 1 5.2357 -2.8934 -7.1413 16 1 3.2876 -1.8864 -8.1764 17 6 2.4759 -0.1275 -2.3620 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 1.7209 -0.2699 1.9979 22 1 1.8584 -2.8627 -0.6830 23 1 2.8117 -3.2942 -3.0849 24 1 2.5802 -3.7585 -5.8266 25 1 2.5341 0.9350 -2.5464 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085834021.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = -11.118884 kcal Electronic energy + Delta-G solvation = -10596.634622 eV Core-core repulsion = 8575.819078 eV Total energy + Delta-G solvation = -2020.815544 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.55515 -36.50671 -33.39282 -30.91185 -29.23049 -26.91510 -24.83536 -22.07856 -19.61649 -18.09816 -17.48992 -16.17672 -15.36558 -14.53713 -13.83467 -13.46516 -12.76784 -12.44976 -11.98846 -11.63733 -11.54694 -11.30503 -11.10232 -10.85268 -10.48934 -10.41574 -10.01309 -9.40270 -9.14382 -7.44038 -6.68990 -6.42687 -4.28700 2.97676 3.07512 3.12856 3.82970 3.91195 4.38181 5.03835 5.07594 5.39108 5.68053 5.90886 5.97650 6.28354 6.59684 6.63964 6.76218 7.07788 7.12698 7.33142 7.72596 7.80356 8.02018 8.35806 8.62756 8.67645 9.27265 9.71211 10.38973 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.097378 B = 0.010297 C = 0.009976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.469140 B = 2718.521943 C = 2806.063758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.187 3.813 3 H 0.041 0.959 4 O -0.563 6.563 5 C -0.206 4.206 6 C -0.232 4.232 7 C -0.005 4.005 8 N -0.256 5.256 9 C -0.348 4.348 10 H 0.104 0.896 11 C 0.044 3.956 12 N -0.845 5.845 13 Si 0.938 3.062 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.276 1.276 17 C -0.072 4.072 18 H 0.060 0.940 19 H 0.042 0.958 20 H 0.061 0.939 21 H 0.359 0.641 22 H 0.108 0.892 23 H 0.161 0.839 24 H 0.276 0.724 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 3.813 3.853 5.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.128 3.872 3 H 0.059 0.941 4 O -0.366 6.366 5 C -0.213 4.213 6 C -0.256 4.256 7 C -0.142 4.142 8 N 0.087 4.913 9 C -0.476 4.476 10 H 0.122 0.878 11 C -0.165 4.165 12 N -0.477 5.477 13 Si 0.763 3.237 14 H -0.189 1.189 15 H -0.200 1.200 16 H -0.201 1.201 17 C -0.208 4.208 18 H 0.079 0.921 19 H 0.061 0.939 20 H 0.080 0.920 21 H 0.204 0.796 22 H 0.126 0.874 23 H 0.178 0.822 24 H 0.087 0.913 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.920 3.269 2.901 4.466 hybrid contribution -0.011 0.389 -0.416 0.570 sum -0.930 3.658 2.485 4.519 Atomic orbital electron populations 1.22443 0.97469 1.02334 1.00695 1.19731 0.91118 0.92901 0.83465 0.94112 1.86683 1.76967 1.57726 1.15270 1.18482 1.14332 0.94174 0.94340 1.20243 1.13734 0.94327 0.97269 1.21974 1.08745 0.90701 0.92810 1.40243 1.36874 1.04630 1.09585 1.19955 1.39236 1.01358 0.87022 0.87794 1.25516 0.95570 0.95195 1.00229 1.69950 1.34611 1.06711 1.36397 0.85705 0.79113 0.79050 0.79872 1.18866 1.19952 1.20142 1.21025 1.13565 0.93112 0.93125 0.92064 0.93937 0.91978 0.79617 0.87425 0.82209 0.91306 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.52 37.15 0.35 -2.50 15 2 C 0.19 3.62 4.02 -27.89 -0.11 3.50 15 3 H 0.04 0.73 8.14 -51.92 -0.42 0.30 15 4 O -0.56 -10.49 13.11 -35.23 -0.46 -10.96 15 5 C -0.21 -5.00 5.15 -104.73 -0.54 -5.54 15 6 C -0.23 -6.06 10.57 -39.68 -0.42 -6.48 15 7 C -0.01 -0.14 10.06 -16.53 -0.17 -0.31 15 8 N -0.26 -7.16 2.91 -62.01 -0.18 -7.34 15 9 C -0.35 -9.54 10.08 -14.76 -0.15 -9.69 15 10 H 0.10 2.68 7.85 -52.49 -0.41 2.26 15 11 C 0.04 1.14 5.37 -17.50 -0.09 1.05 15 12 N -0.85 -23.05 10.82 55.49 0.60 -22.45 15 13 Si 0.94 19.62 29.56 -169.99 -5.03 14.59 15 14 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 17 C -0.07 -1.84 11.28 -16.53 -0.19 -2.03 15 18 H 0.06 1.09 8.14 -51.93 -0.42 0.66 15 19 H 0.04 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.06 1.04 8.14 -51.92 -0.42 0.61 15 21 H 0.36 4.56 9.08 45.56 0.41 4.97 15 22 H 0.11 2.66 8.06 -52.49 -0.42 2.23 15 23 H 0.16 4.55 6.34 -52.49 -0.33 4.21 15 24 H 0.28 6.91 8.31 -40.82 -0.34 6.57 15 25 H 0.13 2.98 8.06 -52.49 -0.42 2.56 15 LS Contribution 224.02 15.07 3.38 3.38 Total: -1.00 -30.76 224.02 -5.01 -35.77 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -2.00 Total: 9.01 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -1.31 Total: -22.00 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.42 Total: -29.79 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.46 Total: -10.96 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.76 -5.01 -35.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085834021.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.651 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds