Wall clock time and date at job start Mon Mar 30 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46816 * 2 1 4 4 O 1.42899 * 109.47084 * 119.99129 * 2 1 3 5 5 C 1.50694 * 109.47517 * 239.99833 * 2 1 3 6 6 C 1.41179 * 126.24293 * 279.69355 * 5 2 1 7 7 C 1.34811 * 107.50464 * 179.82409 * 6 5 2 8 8 N 1.36846 * 108.18574 * 0.43119 * 7 6 5 9 9 C 1.37497 * 125.69714 * 179.70159 * 8 7 6 10 10 H 1.07992 * 120.00447 * 199.23615 * 9 8 7 11 11 C 1.38918 * 119.99349 * 19.23179 * 9 8 7 12 12 N 1.31359 * 120.00442 * 10.47241 * 11 9 8 13 13 Si 1.86800 * 120.00081 * 190.46455 * 11 9 8 14 14 H 1.48507 * 109.46819 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47285 * 120.00189 * 13 11 9 16 16 H 1.48498 * 109.47438 * 240.00805 * 13 11 9 17 17 C 1.34806 * 126.24688 * 99.99236 * 5 2 1 18 18 H 1.09002 * 109.47200 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47295 * 300.00411 * 1 2 3 20 20 H 1.09009 * 109.47300 * 60.00428 * 1 2 3 21 21 H 0.96692 * 114.00492 * 300.00461 * 4 2 1 22 22 H 1.07993 * 126.24621 * 359.97438 * 6 5 2 23 23 H 1.07993 * 125.90388 * 180.16833 * 7 6 5 24 24 H 0.97005 * 120.00425 * 179.97438 * 12 11 9 25 25 H 1.07992 * 125.90920 * 0.02562 * 17 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0323 -0.7104 -1.2304 6 6 2.1299 -2.1078 -1.4060 7 6 2.6206 -2.3279 -2.6422 8 7 2.8402 -1.1150 -3.2366 9 6 3.3434 -0.9209 -4.5014 10 1 3.7694 0.0338 -4.7725 11 6 3.3037 -1.9528 -5.4306 12 7 2.6082 -3.0381 -5.1776 13 14 4.2392 -1.7971 -7.0399 14 1 4.9386 -0.4877 -7.0812 15 1 5.2357 -2.8934 -7.1413 16 1 3.2876 -1.8864 -8.1764 17 6 2.4759 -0.1275 -2.3620 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 1.7209 -0.2699 1.9979 22 1 1.8584 -2.8627 -0.6830 23 1 2.8117 -3.2942 -3.0849 24 1 2.5802 -3.7585 -5.8266 25 1 2.5341 0.9350 -2.5464 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085834021.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:05 Heat of formation + Delta-G solvation = -32.166235 kcal Electronic energy + Delta-G solvation = -10597.547303 eV Core-core repulsion = 8575.819078 eV Total energy + Delta-G solvation = -2021.728225 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.53711 -38.00299 -35.34899 -32.64294 -31.03695 -28.79369 -26.78758 -23.69213 -21.64795 -20.03263 -19.37405 -17.67103 -17.39894 -16.24292 -15.35776 -15.04431 -14.69746 -14.45618 -13.54635 -13.49447 -13.24877 -12.94331 -12.73636 -12.62618 -12.39866 -12.08910 -11.65426 -11.08927 -10.82469 -9.45053 -8.66864 -8.45163 -6.36412 1.30311 1.36935 1.54010 1.93190 2.14745 2.40284 3.02823 3.30639 3.79479 4.27506 4.49016 4.54279 4.67549 4.90296 5.05838 5.07843 5.14302 5.32665 5.41894 5.69762 5.81822 6.05594 6.58673 6.69327 7.18964 7.24372 7.67752 8.43629 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.097378 B = 0.010297 C = 0.009976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.469140 B = 2718.521943 C = 2806.063758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.186 3.814 3 H 0.063 0.937 4 O -0.582 6.582 5 C -0.203 4.203 6 C -0.244 4.244 7 C -0.036 4.036 8 N -0.275 5.275 9 C -0.385 4.385 10 H 0.114 0.886 11 C -0.002 4.002 12 N -0.880 5.880 13 Si 1.018 2.982 14 H -0.253 1.253 15 H -0.269 1.269 16 H -0.268 1.268 17 C -0.090 4.090 18 H 0.043 0.957 19 H 0.084 0.916 20 H 0.058 0.942 21 H 0.388 0.612 22 H 0.114 0.886 23 H 0.144 0.856 24 H 0.283 0.717 25 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 5.119 3.975 6.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.127 3.873 3 H 0.081 0.919 4 O -0.390 6.390 5 C -0.210 4.210 6 C -0.269 4.269 7 C -0.173 4.173 8 N 0.067 4.933 9 C -0.512 4.512 10 H 0.132 0.868 11 C -0.208 4.208 12 N -0.512 5.512 13 Si 0.838 3.162 14 H -0.176 1.176 15 H -0.194 1.194 16 H -0.193 1.193 17 C -0.225 4.225 18 H 0.062 0.938 19 H 0.103 0.897 20 H 0.077 0.923 21 H 0.237 0.763 22 H 0.132 0.868 23 H 0.161 0.839 24 H 0.093 0.907 25 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.903 4.596 3.067 5.598 hybrid contribution -0.058 -0.024 -0.353 0.358 sum -0.961 4.572 2.714 5.403 Atomic orbital electron populations 1.22344 0.95318 1.01837 1.02643 1.19758 0.92632 0.92983 0.81888 0.91884 1.86595 1.77418 1.58499 1.16484 1.19101 1.12395 0.93472 0.96077 1.20456 1.13784 0.95831 0.96799 1.21945 1.10840 0.90647 0.93890 1.40527 1.37536 1.04994 1.10261 1.20467 1.40645 1.02557 0.87498 0.86842 1.26670 0.95812 0.94284 1.03986 1.70061 1.35555 1.07588 1.38000 0.84541 0.77579 0.79525 0.74587 1.17591 1.19411 1.19304 1.21627 1.13557 0.94096 0.93264 0.93781 0.89699 0.92338 0.76341 0.86773 0.83867 0.90710 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.52 71.98 0.68 -4.30 15 2 C 0.19 6.74 4.02 29.84 0.12 6.86 15 3 H 0.06 2.02 8.14 -2.38 -0.02 2.00 15 4 O -0.58 -20.14 13.11 -148.98 -1.95 -22.10 15 5 C -0.20 -9.75 5.15 -19.93 -0.10 -9.85 15 6 C -0.24 -12.95 10.57 22.21 0.23 -12.71 15 7 C -0.04 -2.07 10.06 83.12 0.84 -1.24 15 8 N -0.27 -15.66 2.91 -350.09 -1.02 -16.68 15 9 C -0.38 -21.32 10.08 83.97 0.85 -20.47 15 10 H 0.11 5.83 7.85 -2.91 -0.02 5.81 15 11 C 0.00 -0.12 5.37 84.93 0.46 0.34 15 12 N -0.88 -48.98 10.82 21.65 0.23 -48.75 15 13 Si 1.02 39.82 29.56 68.60 2.03 41.85 15 14 H -0.25 -9.30 7.11 99.48 0.71 -8.59 15 15 H -0.27 -10.23 7.11 99.48 0.71 -9.53 15 16 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 17 C -0.09 -4.58 11.28 83.12 0.94 -3.64 15 18 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 19 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.06 1.81 8.14 -2.38 -0.02 1.79 15 21 H 0.39 8.41 9.08 -74.06 -0.67 7.74 15 22 H 0.11 5.72 8.06 -2.91 -0.02 5.70 15 23 H 0.14 8.57 6.34 -2.91 -0.02 8.55 15 24 H 0.28 14.35 8.31 -92.70 -0.77 13.58 15 25 H 0.16 6.87 8.06 -2.91 -0.02 6.84 15 Total: -1.00 -66.69 224.02 3.82 -62.87 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.51 Total: 27.82 kcal Atomic # 6 Polarization: -49.03 SS G_CDS: 4.01 Total: -45.01 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.78 Total: -65.42 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.95 Total: -22.10 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -66.69 3.82 -62.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085834021.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.706 kcal (2) G-P(sol) polarization free energy of solvation -66.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds